Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 25G

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 62


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 3.654 -3.65 -1.388
2 C17 C C2 N Y N 0 -1.523 -0.899 0.305
3 C20 C C3 N Y N 0 -3.767 -1.712 0.071
4 C21 C C4 N Y N 0 -4.255 -0.46 0.447
5 C22 C C5 N Y N 0 -3.365 0.572 0.746
6 C24 C C6 N Y N 0 -0.657 2.178 -0.273
7 C26 C C7 N Y N 0 -1.351 3.304 -0.674
8 C28 C C8 N Y N 0 0.743 2.352 -2.208
9 C01 C C9 N N N 0 4.891 2.118 -0.426
10 C02 C C10 N N N 0 5.075 0.611 -0.229
11 C03 C C11 N N N 0 4.559 0.211 1.154
12 C04 C C12 N N N 0 5.345 0.965 2.229
13 C05 C C13 N N N 0 5.161 2.471 2.033
14 C06 C C14 N N N 0 5.677 2.872 0.649
15 C07 C C15 N N N 0 4.742 -1.295 1.351
16 C08 C C16 N Y N 0 3.877 -2.039 0.367
17 C09 C C17 N Y N 0 4.454 -2.967 -0.485
18 C11 C C18 N Y N 0 2.296 -3.372 -1.41
19 C12 C C19 N Y N 0 1.785 -2.423 -0.528
20 N13 N N1 N Y N 0 2.586 -1.791 0.321
21 C14 C C20 N N N 0 0.337 -2.11 -0.543
22 O15 O O1 N N N 0 -0.414 -2.747 -1.255
23 N16 N N2 N N N 0 -0.146 -1.12 0.233
24 C18 C C21 N Y N 0 -2.007 0.352 0.674
25 C19 C C22 N Y N 0 -2.408 -1.928 0.001
26 C23 C C23 N N N 0 -1.045 1.465 0.997
27 C25 C C24 N Y N 0 -0.995 3.957 -1.839
28 C27 C C25 N Y N 0 0.39 1.702 -1.04
29 C29 C C26 N Y N 0 0.055 3.485 -2.603
30 C30 C C27 N Y N 0 -5.714 -0.225 0.522
31 N31 N N3 N Y N 0 -6.691 -1.128 0.257
32 N32 N N4 N Y N 0 -6.31 0.897 0.866
33 N33 N N5 N Y N 0 -7.586 0.759 0.828
34 N34 N N6 N Y N 0 -7.897 -0.438 0.468
35 H101 H H1 N N N 0 4.08 -4.378 -2.063
36 H201 H H2 N N N 0 -4.454 -2.511 -0.165
37 H221 H H3 N N N 0 -3.74 1.543 1.037
38 H261 H H4 N N N 0 -2.172 3.673 -0.077
39 H281 H H5 N N N 0 1.563 1.983 -2.805
40 H012 H H6 N N N 0 5.259 2.403 -1.411
41 H011 H H7 N N N 0 3.834 2.368 -0.346
42 H021 H H8 N N N 0 4.515 0.074 -0.995
43 H022 H H9 N N N 0 6.133 0.361 -0.309
44 H031 H H10 N N N 0 3.501 0.462 1.235
45 H052 H H14 N N N 0 5.721 3.008 2.799
46 H042 H H11 N N N 0 4.977 0.68 3.215
47 H041 H H12 N N N 0 6.402 0.714 2.149
48 H051 H H13 N N N 0 4.103 2.722 2.113
49 H061 H H15 N N N 0 6.735 2.621 0.569
50 H062 H H16 N N N 0 5.546 3.945 0.509
51 H071 H H17 N N N 0 5.787 -1.558 1.187
52 H072 H H18 N N N 0 4.454 -1.567 2.366
53 H091 H H19 N N N 0 5.516 -3.158 -0.445
54 H111 H H20 N N N 0 1.644 -3.885 -2.102
55 H161 H H21 N N N 0 0.462 -0.561 0.741
56 H191 H H22 N N N 0 -2.029 -2.896 -0.29
57 H232 H H23 N N N 0 -0.153 1.051 1.468
58 H231 H H24 N N N 0 -1.521 2.171 1.678
59 H251 H H25 N N N 0 -1.538 4.837 -2.152
60 H271 H H26 N N N 0 0.927 0.817 -0.732
61 H291 H H27 N N N 0 0.331 3.993 -3.515
62 H1 H H28 N N N 0 -6.58 -2.051 -0.02