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PDBeChem : Atoms of Molecule
Molecule : 2PR
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 36
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
OP3 |
O |
O3P |
N |
N |
Y |
0 |
5.162 |
-1.694 |
-1.541 |
2 |
P |
P |
P |
N |
N |
N |
0 |
4.78 |
-0.763 |
-0.285 |
3 |
OP1 |
O |
O1P |
N |
N |
N |
0 |
4.709 |
-1.59 |
0.94 |
4 |
OP2 |
O |
O2P |
N |
N |
N |
0 |
5.904 |
0.375 |
-0.099 |
5 |
O5' |
O |
O5' |
N |
N |
N |
0 |
3.351 |
-0.068 |
-0.547 |
6 |
C5' |
C |
C5' |
N |
N |
N |
0 |
2.686 |
0.737 |
0.428 |
7 |
C4' |
C |
C4' |
R |
N |
N |
0 |
1.359 |
1.238 |
-0.143 |
8 |
O4' |
O |
O4' |
N |
N |
N |
0 |
0.448 |
0.138 |
-0.353 |
9 |
C3' |
C |
C3' |
S |
N |
N |
0 |
0.621 |
2.127 |
0.89 |
10 |
O3' |
O |
O3' |
N |
N |
N |
0 |
1.058 |
3.485 |
0.8 |
11 |
C2' |
C |
C2' |
N |
N |
N |
0 |
-0.854 |
1.991 |
0.44 |
12 |
C1' |
C |
C1' |
R |
N |
N |
0 |
-0.878 |
0.692 |
-0.388 |
13 |
N9 |
N |
N9 |
N |
Y |
N |
0 |
-1.83 |
-0.255 |
0.198 |
14 |
C8 |
C |
C8 |
N |
Y |
N |
0 |
-1.537 |
-1.245 |
1.089 |
15 |
N7 |
N |
N7 |
N |
Y |
N |
0 |
-2.618 |
-1.898 |
1.402 |
16 |
C5 |
C |
C5 |
N |
Y |
N |
0 |
-3.674 |
-1.371 |
0.733 |
17 |
C6 |
C |
C6 |
N |
Y |
N |
0 |
-5.039 |
-1.655 |
0.676 |
18 |
N1 |
N |
N1 |
N |
Y |
N |
0 |
-5.809 |
-0.919 |
-0.106 |
19 |
C2 |
C |
C2 |
N |
Y |
N |
0 |
-5.307 |
0.075 |
-0.829 |
20 |
N2 |
N |
N2 |
N |
N |
N |
0 |
-6.159 |
0.816 |
-1.632 |
21 |
N3 |
N |
N3 |
N |
Y |
N |
0 |
-4.02 |
0.381 |
-0.807 |
22 |
C4 |
C |
C4 |
N |
Y |
N |
0 |
-3.18 |
-0.305 |
-0.044 |
23 |
HOP3 |
H |
HOP3 |
N |
N |
N |
0 |
6.013 |
-2.145 |
-1.451 |
24 |
HOP2 |
H |
HOP2 |
N |
N |
N |
0 |
6.005 |
0.956 |
-0.865 |
25 |
H5' |
H |
H5'1 |
N |
N |
N |
0 |
2.496 |
0.143 |
1.322 |
26 |
H5'' |
H |
H5'2 |
N |
N |
N |
0 |
3.316 |
1.589 |
0.686 |
27 |
H4' |
H |
H4' |
N |
N |
N |
0 |
1.523 |
1.783 |
-1.073 |
28 |
H3' |
H |
H3' |
N |
N |
N |
0 |
0.756 |
1.743 |
1.901 |
29 |
HO3' |
H |
H3T |
N |
N |
Y |
0 |
0.625 |
4.08 |
1.427 |
30 |
H2' |
H |
H2'1 |
N |
N |
N |
0 |
-1.511 |
1.904 |
1.305 |
31 |
H2'' |
H |
H2'2 |
N |
N |
N |
0 |
-1.145 |
2.842 |
-0.177 |
32 |
H1' |
H |
H1' |
N |
N |
N |
0 |
-1.16 |
0.914 |
-1.418 |
33 |
H8 |
H |
H8 |
N |
N |
N |
0 |
-0.552 |
-1.456 |
1.479 |
34 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-5.459 |
-2.462 |
1.259 |
35 |
HN21 |
H |
HN21 |
N |
N |
N |
0 |
-7.105 |
0.605 |
-1.659 |
36 |
HN22 |
H |
HN22 |
N |
N |
N |
0 |
-5.808 |
1.546 |
-2.166 |
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