Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 2PR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OP3 O O3P N N Y 0 5.162 -1.694 -1.541
2 P P P N N N 0 4.78 -0.763 -0.285
3 OP1 O O1P N N N 0 4.709 -1.59 0.94
4 OP2 O O2P N N N 0 5.904 0.375 -0.099
5 O5' O O5' N N N 0 3.351 -0.068 -0.547
6 C5' C C5' N N N 0 2.686 0.737 0.428
7 C4' C C4' R N N 0 1.359 1.238 -0.143
8 O4' O O4' N N N 0 0.448 0.138 -0.353
9 C3' C C3' S N N 0 0.621 2.127 0.89
10 O3' O O3' N N N 0 1.058 3.485 0.8
11 C2' C C2' N N N 0 -0.854 1.991 0.44
12 C1' C C1' R N N 0 -0.878 0.692 -0.388
13 N9 N N9 N Y N 0 -1.83 -0.255 0.198
14 C8 C C8 N Y N 0 -1.537 -1.245 1.089
15 N7 N N7 N Y N 0 -2.618 -1.898 1.402
16 C5 C C5 N Y N 0 -3.674 -1.371 0.733
17 C6 C C6 N Y N 0 -5.039 -1.655 0.676
18 N1 N N1 N Y N 0 -5.809 -0.919 -0.106
19 C2 C C2 N Y N 0 -5.307 0.075 -0.829
20 N2 N N2 N N N 0 -6.159 0.816 -1.632
21 N3 N N3 N Y N 0 -4.02 0.381 -0.807
22 C4 C C4 N Y N 0 -3.18 -0.305 -0.044
23 HOP3 H HOP3 N N N 0 6.013 -2.145 -1.451
24 HOP2 H HOP2 N N N 0 6.005 0.956 -0.865
25 H5' H H5'1 N N N 0 2.496 0.143 1.322
26 H5'' H H5'2 N N N 0 3.316 1.589 0.686
27 H4' H H4' N N N 0 1.523 1.783 -1.073
28 H3' H H3' N N N 0 0.756 1.743 1.901
29 HO3' H H3T N N Y 0 0.625 4.08 1.427
30 H2' H H2'1 N N N 0 -1.511 1.904 1.305
31 H2'' H H2'2 N N N 0 -1.145 2.842 -0.177
32 H1' H H1' N N N 0 -1.16 0.914 -1.418
33 H8 H H8 N N N 0 -0.552 -1.456 1.479
34 H6 H H6 N N N 0 -5.459 -2.462 1.259
35 HN21 H HN21 N N N 0 -7.105 0.605 -1.659
36 HN22 H HN22 N N N 0 -5.808 1.546 -2.166