Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 355

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 75


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 9.32 -0.092 0.001
2 C2 C C2 N N N 0 8.143 0.83 0.183
3 C3 C C3 N N N 0 8.307 2.003 0.834
4 C4 C C4 N N N 0 7.219 2.87 1.01
5 C5 C C5 N N N 0 5.996 2.521 0.519
6 C6 C C6 N N N 0 5.845 1.297 -0.157
7 N1 N N1 N N N 0 4.651 0.955 -0.637
8 C7 C C7 N N N 0 4.468 -0.189 -1.279
9 C8 C C8 N N N 0 3.104 -0.544 -1.809
10 N2 N N2 N N N 0 2.175 -0.721 -0.69
11 C9 C C9 N N N 0 1.477 0.332 -0.231
12 O1 O O1 N N N 0 1.638 1.413 -0.764
13 N3 N N3 N N N 0 0.61 0.241 0.789
14 C10 C C10 N N N 0 -0.111 1.438 1.228
15 C11 C C11 N N N 0 -1.424 1.556 0.452
16 C12 C C12 N N N 0 -2.118 2.869 0.819
17 C13 C C13 N N N 0 -3.431 2.987 0.043
18 C14 C C14 N N N 0 -4.342 1.811 0.402
19 C15 C C15 N N N 0 -3.649 0.498 0.035
20 C16 C C16 N N N 0 -2.335 0.38 0.811
21 C17 C C17 N N N 0 -5.636 1.927 -0.363
22 O2 O O2 N N N 0 -5.812 2.858 -1.12
23 N4 N N4 N N N 0 -6.597 0.996 -0.205
24 C18 C C18 N N N 0 -7.855 1.108 -0.948
25 C19 C C19 N Y N 0 -8.752 -0.05 -0.595
26 C20 C C20 N Y N 0 -9.636 0.058 0.463
27 C21 C C21 N Y N 0 -10.459 -1.004 0.787
28 C22 C C22 N Y N 0 -10.399 -2.174 0.053
29 C23 C C23 N Y N 0 -9.516 -2.282 -1.005
30 C24 C C24 N Y N 0 -8.696 -1.218 -1.332
31 C25 C C25 N N N 0 0.39 -0.933 1.42
32 O3 O O3 N N N 0 -0.398 -1.007 2.343
33 C26 C C26 N Y N 0 1.128 -2.123 0.959
34 C27 C C27 N Y N 0 2.021 -1.976 -0.117
35 C28 C C28 N Y N 0 2.726 -3.076 -0.578
36 C29 C C29 N Y N 0 2.543 -4.307 0.019
37 C30 C C30 N Y N 0 1.659 -4.455 1.077
38 C31 C C31 N Y N 0 0.956 -3.369 1.556
39 C32 C C32 N N N 0 5.528 -1.056 -1.462
40 C33 C C33 N N N 0 6.786 -0.703 -0.961
41 O4 O O4 N N N 0 7.743 -1.447 -1.107
42 N5 N N5 N N N 0 6.926 0.475 -0.317
43 H1 H H1 N N N 0 10.205 0.353 0.457
44 H2 H H2 N N N 0 9.109 -1.049 0.477
45 H3 H H3 N N N 0 9.499 -0.248 -1.063
46 H4 H H4 N N N 0 9.278 2.273 1.221
47 H5 H H5 N N N 0 7.349 3.806 1.531
48 H6 H H6 N N N 0 5.15 3.18 0.649
49 H7 H H7 N N N 0 2.745 0.257 -2.456
50 H8 H H8 N N N 0 3.166 -1.471 -2.38
51 H9 H H9 N N N 0 -0.324 1.363 2.295
52 H10 H H10 N N N 0 0.502 2.32 1.041
53 H11 H H11 N N N 0 -1.216 1.541 -0.618
54 H12 H H12 N N N 0 -2.325 2.884 1.889
55 H13 H H13 N N N 0 -1.469 3.707 0.564
56 H14 H H14 N N N 0 -3.925 3.922 0.305
57 H15 H H15 N N N 0 -3.223 2.972 -1.027
58 H16 H H16 N N N 0 -4.55 1.826 1.472
59 H17 H H17 N N N 0 -4.298 -0.34 0.29
60 H18 H H18 N N N 0 -3.441 0.483 -1.035
61 H19 H H19 N N N 0 -1.841 -0.556 0.549
62 H20 H H20 N N N 0 -2.543 0.395 1.881
63 H21 H H21 N N N 0 -6.457 0.251 0.401
64 H22 H H22 N N N 0 -8.349 2.044 -0.687
65 H23 H H23 N N N 0 -7.647 1.093 -2.018
66 H24 H H24 N N N 0 -9.683 0.972 1.036
67 H25 H H25 N N N 0 -11.149 -0.92 1.613
68 H26 H H26 N N N 0 -11.042 -3.004 0.307
69 H27 H H27 N N N 0 -9.469 -3.196 -1.578
70 H28 H H28 N N N 0 -8.009 -1.301 -2.161
71 H29 H H29 N N N 0 3.417 -2.971 -1.402
72 H30 H H30 N N N 0 3.093 -5.164 -0.341
73 H31 H H31 N N N 0 1.526 -5.424 1.534
74 H32 H H32 N N N 0 0.268 -3.487 2.38
75 H33 H H33 N N N 0 5.388 -1.99 -1.985