Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 379

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P11 P P11 N N N 0 -0.472 0.84 -0.094
2 C1 C C1 N N N 0 -3.161 1.38 -0.061
3 C3 C C3 R N N 0 -1.822 1.968 0.387
4 C6 C C6 N N N 0 -3.371 0.02 0.608
5 C8 C C8 N Y N 0 -4.69 -0.559 0.167
6 N10 N N10 N N N 0 -1.621 3.274 -0.256
7 C11 C C11 N N N 0 1.124 1.541 0.44
8 O12 O O12 N N N 0 -0.47 0.657 -1.693
9 C13 C C13 S N N 0 2.243 0.539 0.149
10 O13 O O13 N N N 0 -0.675 -0.475 0.554
11 C15 C C15 N N N 0 2.191 -0.578 1.159
12 C16 C C16 N N N 0 3.597 1.247 0.241
13 C01 C C01 N Y N 0 -4.761 -1.362 -0.956
14 C17 C C17 N Y N 0 4.69 0.292 -0.165
15 N18 N N18 N Y N 0 -5.913 -1.873 -1.348
16 C19 C C19 N Y N 0 -7.033 -1.641 -0.692
17 C20 C C20 N Y N 0 -7.039 -0.847 0.439
18 C21 C C21 N Y N 0 -5.847 -0.297 0.885
19 O23 O O23 N N N 0 1.346 -0.574 2.022
20 O24 O O24 N N N 0 3.085 -1.579 1.099
21 C36 C C36 N Y N 0 5.082 0.212 -1.488
22 C37 C C37 N Y N 0 6.085 -0.663 -1.86
23 C38 C C38 N Y N 0 6.697 -1.458 -0.909
24 C39 C C39 N Y N 0 6.306 -1.377 0.414
25 C40 C C40 N Y N 0 5.306 -0.498 0.787
26 H1 H H1 N N N 0 -3.968 2.054 0.226
27 H2 H H2 N N N 0 -3.16 1.256 -1.144
28 H12 H H12 N N N 0 -1.824 2.092 1.469
29 H6 H H6 N N N 0 -2.564 -0.654 0.321
30 H7 H H7 N N N 0 -3.372 0.145 1.691
31 H11 H H11 N N N 0 -1.615 3.185 -1.261
32 H13 H H13 N N N 0 -2.32 3.936 0.045
33 H16 H H16 N N N 0 1.314 2.467 -0.103
34 H17 H H17 N N N 0 1.09 1.748 1.51
35 H4 H H4 N N N 0 -0.342 1.48 -2.183
36 H18 H H18 N N N 0 2.114 0.13 -0.853
37 H19 H H19 N N N 0 3.602 2.109 -0.426
38 H20 H H20 N N N 0 3.765 1.578 1.265
39 H8 H H8 N N N 0 -3.864 -1.574 -1.518
40 H10 H H10 N N N 0 -7.957 -2.076 -1.044
41 H14 H H14 N N N 0 -7.96 -0.661 0.971
42 H15 H H15 N N N 0 -5.821 0.324 1.768
43 H9 H H9 N N N 0 3.012 -2.273 1.768
44 H21 H H21 N N N 0 4.604 0.833 -2.232
45 H22 H H22 N N N 0 6.39 -0.727 -2.894
46 H25 H H25 N N N 0 7.48 -2.142 -1.2
47 H23 H H23 N N N 0 6.784 -1.998 1.158
48 H24 H H24 N N N 0 5.003 -0.432 1.822