Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 38P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 2.047 1.477 0.434
2 N2 N N2 N Y N 0 1.147 2.505 0.752
3 C3 C C3 N Y N 0 -0.135 2.271 0.766
4 N4 N N4 N Y N 0 -0.644 1.072 0.486
5 C5 C C5 N Y N 0 0.13 0.045 0.176
6 C6 C C6 N Y N 0 1.535 0.227 0.135
7 C7 C C7 N Y N 0 2.588 -0.613 -0.146
8 C8 C C8 N Y N 0 3.765 0.154 -0.025
9 C9 C C9 N Y N 0 3.384 1.433 0.346
10 C10 C C10 N N N 0 5.145 -0.322 -0.233
11 O11 O O11 N N N 0 5.349 -1.481 -0.54
12 N12 N N12 N N N 0 6.181 0.526 -0.082
13 C13 C C13 N N N 0 7.552 0.053 -0.289
14 C14 C C14 N N N 0 8.53 1.207 -0.056
15 C15 C C15 N N N 0 9.962 0.713 -0.272
16 C16 C C16 N N N 0 2.5 -2.073 -0.512
17 N17 N N17 N N N 0 -0.424 -1.186 -0.108
18 C18 C C18 N Y N 0 -1.803 -1.379 0.019
19 C19 C C19 N Y N 0 -2.302 -2.637 0.336
20 C20 C C20 N Y N 0 -3.664 -2.832 0.463
21 C21 C C21 N Y N 0 -4.538 -1.78 0.275
22 C22 C C22 N Y N 0 -4.046 -0.513 -0.043
23 C23 C C23 N Y N 0 -2.671 -0.314 -0.166
24 C24 C C24 N N N 0 -4.98 0.615 -0.245
25 O25 O O25 N N N 0 -4.55 1.718 -0.523
26 N26 N N26 N N N 0 -6.308 0.422 -0.122
27 C27 C C27 N N N 0 -7.233 1.54 -0.322
28 C28 C C28 N N N 0 -8.597 1.461 0.367
29 C29 C C29 N N N 0 -8.493 1.275 -1.148
30 C30 C C30 N N N 0 -1.355 -3.791 0.542
31 H3 H H3 N N N 0 -0.809 3.077 1.013
32 H9 H H9 N N N 0 4.053 2.263 0.521
33 HN12 H HN12 N N N 0 6.019 1.451 0.163
34 H13 H H13 N N N 0 7.768 -0.753 0.413
35 H13A H H13A N N N 0 7.66 -0.315 -1.309
36 H14 H H14 N N N 0 8.314 2.013 -0.758
37 H14A H H14A N N N 0 8.422 1.575 0.964
38 H15 H H15 N N N 0 10.178 -0.093 0.429
39 H15A H H15A N N N 0 10.069 0.345 -1.293
40 H15B H H15B N N N 0 10.659 1.535 -0.107
41 H16 H H16 N N N 0 2.315 -2.169 -1.582
42 H16A H H16A N N N 0 3.439 -2.567 -0.26
43 H16B H H16B N N N 0 1.685 -2.538 0.042
44 H23 H H23 N N N 0 -2.285 0.664 -0.412
45 HN17 H HN17 N N N 0 0.144 -1.918 -0.397
46 H20 H H20 N N N 0 -4.047 -3.812 0.709
47 H21 H H21 N N N 0 -5.602 -1.937 0.375
48 HN26 H HN26 N N N 0 -6.651 -0.458 0.1
49 H27 H H27 N N N 0 -6.77 2.523 -0.41
50 H28 H H28 N N N 0 -8.806 0.577 0.97
51 H28A H H28A N N N 0 -9.031 2.391 0.732
52 H29 H H29 N N N 0 -8.86 2.084 -1.78
53 H29A H H29A N N N 0 -8.634 0.269 -1.542
54 H30 H H30 N N N 0 -1.067 -3.841 1.592
55 H30A H H30A N N N 0 -1.848 -4.72 0.256
56 H30B H H30B N N N 0 -0.467 -3.646 -0.073