Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 3NZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O O O N N N 0 1.668 -2.782 1.286
2 C C C N N N 0 1.663 -1.593 1.046
3 CA C CA S N N 0 2.957 -0.821 1.031
4 CB C CB N N N 0 3.421 -0.63 -0.414
5 CG C CG N Y N 0 4.647 0.246 -0.436
6 CD2 C CD2 N Y N 0 5.904 -0.325 -0.352
7 CE2 C CE2 N Y N 0 7.03 0.476 -0.372
8 CZ C CZ N Y N 0 6.898 1.853 -0.477
9 OM O OM N N N 0 8.004 2.642 -0.492
10 CMZ C CMZ N N N 0 9.271 1.987 -0.401
11 CE1 C CE1 N Y N 0 5.636 2.422 -0.562
12 CD1 C CD1 N Y N 0 4.514 1.617 -0.547
13 N N N N N N 0 3.979 -1.565 1.779
14 N3' N N3' N N N 0 0.5 -0.964 0.785
15 C3' C C3' S N N 0 -0.758 -1.715 0.793
16 C4' C C4' S N N 0 -1.038 -2.312 -0.599
17 C5' C C5' N N N 0 -1.12 -3.837 -0.504
18 O5' O O5' N N N 0 -1.264 -4.389 -1.815
19 C2' C C2' R N N 0 -1.954 -0.767 1.051
20 O2' O O2' N N N 0 -1.519 0.448 1.664
21 C1' C C1' R N N 0 -2.476 -0.506 -0.385
22 O4' O O4' N N N 0 -2.297 -1.782 -1.046
23 N9 N N9 N Y N 0 -3.891 -0.127 -0.359
24 C8 C C8 N Y N 0 -4.954 -0.965 -0.528
25 N7 N N7 N Y N 0 -6.066 -0.294 -0.444
26 C5 C C5 N Y N 0 -5.789 1.012 -0.217
27 C4 C C4 N Y N 0 -4.39 1.134 -0.154
28 C6 C C6 N Y N 0 -6.564 2.171 -0.042
29 N6 N N6 N N N 0 -7.946 2.112 -0.087
30 N1 N N1 N Y N 0 -5.94 3.325 0.169
31 C2 C C2 N Y N 0 -4.622 3.391 0.215
32 N3 N N3 N Y N 0 -3.855 2.331 0.063
33 H1 H H1 N N N 0 2.804 0.153 1.496
34 H2 H H2 N N N 0 3.659 -1.6 -0.851
35 H3 H H3 N N N 0 2.626 -0.157 -0.991
36 H4 H H4 N N N 0 6.005 -1.397 -0.27
37 H5 H H5 N N N 0 8.011 0.03 -0.305
38 H6 H H6 N N N 0 9.324 1.427 0.533
39 H7 H H7 N N N 0 9.388 1.304 -1.242
40 H8 H H8 N N N 0 10.067 2.731 -0.424
41 H9 H H9 N N N 0 5.532 3.494 -0.643
42 H10 H H10 N N N 0 3.531 2.06 -0.613
43 H11 H H11 N N N 0 3.726 -1.649 2.752
44 H12 H H12 N N N 0 4.139 -2.473 1.368
45 H14 H H14 N N N 0 0.495 -0.013 0.593
46 H15 H H15 N N N 0 -0.726 -2.502 1.547
47 H16 H H16 N N N 0 -0.246 -2.026 -1.291
48 H17 H H17 N N N 0 -0.209 -4.222 -0.046
49 H18 H H18 N N N 0 -1.98 -4.118 0.104
50 H19 H H19 N N N 0 -1.322 -5.354 -1.831
51 H20 H H20 N N N 0 -2.715 -1.257 1.658
52 H21 H H21 N N N 0 -2.233 1.075 1.845
53 H22 H H22 N N N 0 -1.883 0.266 -0.875
54 H26 H H26 N N N 0 -4.155 4.349 0.388
55 H23 H H23 N N N 0 -4.883 -2.027 -0.706
56 H24 H H24 N N N 0 -8.39 1.263 -0.242
57 H25 H H25 N N N 0 -8.47 2.919 0.035