Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 3PT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 72


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O0H O O0H N N N 0 -5.669 0.791 -1.794
2 C0G C C0G N N N 0 -5.234 1.518 -0.933
3 C0I C C0I N N N 0 -5.26 3.013 -1.124
4 C0J C C0J N N N 0 -5.884 3.342 -2.481
5 C0K C C0K N N N 0 -5.91 4.86 -2.675
6 O0D O O0D N N N 0 -4.732 0.994 0.197
7 C0C C C0C R N N 0 -4.744 -0.453 0.315
8 C0E C C0E N N N 0 -6.055 -0.9 0.965
9 O0F O O0F N N N 0 -7.166 -0.576 0.088
10 C0L C C0L N N N 0 -8.395 -0.906 0.515
11 C0N C C0N N N N 0 -9.597 -0.601 -0.342
12 C0P C C0P N N N 0 -10.865 -1.075 0.371
13 C0Q C C0Q N N N 0 -12.085 -0.765 -0.499
14 O0M O O0M N N N 0 -8.538 -1.446 1.586
15 C0B C C0B N N N 0 -3.566 -0.904 1.18
16 OP1 O OP1 N N N 0 -2.34 -0.59 0.516
17 P1 P P1 N N N 0 -0.894 -0.924 1.14
18 OP3 O OP3 N N N 0 -0.676 -0.061 2.481
19 OP2 O OP2 N N N 0 -0.818 -2.367 1.464
20 O1 O O1 N N N 0 0.251 -0.553 0.071
21 C1 C C1 S N N 0 1.636 -0.831 0.286
22 C2 C C2 S N N 0 2.429 0.477 0.259
23 O2 O O2 N N N 0 2.261 1.11 -1.011
24 C3 C C3 S N N 0 3.912 0.18 0.489
25 O3 O O3 N N N 0 4.652 1.402 0.465
26 P3 P P3 N N N 0 5.521 1.926 1.714
27 O12 O O12 N N N 0 4.542 2.257 2.948
28 O10 O O10 N N N 0 6.486 0.879 2.118
29 O11 O O11 N N N 0 6.32 3.258 1.291
30 C4 C C4 S N N 0 4.423 -0.749 -0.614
31 O4 O O4 N N N 0 5.808 -1.026 -0.399
32 P4 P P4 N N N 0 6.953 -0.655 -1.469
33 OP4 O OP4 N N N 0 7.044 0.945 -1.624
34 OP6 O OP6 N N N 0 8.369 -1.227 -0.959
35 OP5 O OP5 N N N 0 6.62 -1.26 -2.778
36 C5 C C5 R N N 0 3.63 -2.057 -0.588
37 O5 O O5 N N N 0 4.108 -2.924 -1.618
38 C6 C C6 R N N 0 2.147 -1.76 -0.818
39 O6 O O6 N N N 0 1.407 -2.982 -0.793
40 H1 H H1 N N N 0 -5.852 3.47 -0.331
41 H2 H H2 N N N 0 -4.242 3.401 -1.087
42 H3 H H3 N N N 0 -5.291 2.885 -3.274
43 H4 H H4 N N N 0 -6.901 2.954 -2.518
44 H5 H H5 N N N 0 -6.354 5.095 -3.643
45 H6 H H6 N N N 0 -6.502 5.317 -1.883
46 H7 H H7 N N N 0 -4.892 5.248 -2.639
47 H8 H H8 N N N 0 -4.66 -0.899 -0.676
48 H9 H H9 N N N 0 -6.028 -1.976 1.135
49 H10 H H10 N N N 0 -6.182 -0.385 1.918
50 H11 H H11 N N N 0 -9.657 0.474 -0.515
51 H12 H H12 N N N 0 -9.502 -1.118 -1.297
52 H13 H H13 N N N 0 -10.805 -2.149 0.544
53 H14 H H14 N N N 0 -10.96 -0.558 1.326
54 H15 H H15 N N N 0 -11.991 -1.282 -1.454
55 H19 H H19 N N N 0 -3.625 -1.98 1.342
56 H16 H H16 N N N 0 -12.988 -1.103 0.009
57 H17 H H17 N N N 0 -12.145 0.309 -0.672
58 H18 H H18 N N N 0 -3.602 -0.389 2.14
59 H20 H H20 N N N 0 -0.713 0.895 2.344
60 H21 H H21 N N N 0 1.764 -1.314 1.255
61 H22 H H22 N N N 0 2.064 1.138 1.045
62 H23 H H23 N N N 0 1.344 1.328 -1.224
63 H24 H H24 N N N 0 4.039 -0.303 1.458
64 H25 H H25 N N N 0 3.882 2.936 2.755
65 H26 H H26 N N N 0 6.867 3.63 1.997
66 H27 H H27 N N N 0 4.295 -0.266 -1.583
67 H28 H H28 N N N 0 7.26 1.408 -0.803
68 H29 H H29 N N N 0 9.107 -1.04 -1.555
69 H30 H H30 N N N 0 3.758 -2.54 0.381
70 H31 H H31 N N N 0 3.649 -3.774 -1.661
71 H32 H H32 N N N 0 2.02 -1.277 -1.787
72 H33 H H33 N N N 0 1.678 -3.619 -1.468