Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 49H

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 70


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 -0.648 1.798 -1.579
2 CG1 C CG1 N Y N 0 1.601 -0.478 -0.309
3 CG2 C CG2 N Y N 0 1.715 2.027 -0.996
4 CG3 C CG3 N Y N 0 -2.813 1.048 -0.755
5 CD1 C CD1 N Y N 0 2.785 -1.145 -0.563
6 CD2 C CD2 N Y N 0 1.299 -0.067 0.976
7 CD3 C CD3 N Y N 0 2.949 2.357 -1.524
8 CD4 C CD4 N Y N 0 1.404 2.375 0.305
9 CD5 C CD5 N Y N 0 -3.72 1.515 -1.709
10 CD6 C CD6 N Y N 0 -3.256 0.761 0.543
11 CE1 C CE1 N Y N 0 3.668 -1.403 0.469
12 CE2 C CE2 N Y N 0 2.182 -0.324 2.008
13 CE3 C CE3 N Y N 0 3.873 3.036 -0.75
14 CE4 C CE4 N Y N 0 2.327 3.054 1.079
15 CE5 C CE5 N Y N 0 -5.043 1.694 -1.371
16 CE6 C CE6 N Y N 0 -4.588 0.944 0.872
17 CZ1 C CZ1 N Y N 0 3.367 -0.992 1.755
18 CZ2 C CZ2 N Y N 0 3.562 3.384 0.552
19 CZ3 C CZ3 N Y N 0 -5.481 1.409 -0.083
20 CL1 CL CL1 N N N 0 4.475 -1.316 3.052
21 CL2 CL CL2 N N N 0 5.424 3.451 -1.412
22 CM1 C CM1 N N N 0 -7.652 2.07 -0.787
23 CM2 C CM2 N N N 0 -1.99 -1.102 3.401
24 CM3 C CM3 N N N 0 -3.066 1.14 3.638
25 C1 C C1 N N N 0 1.099 -3.884 -1.714
26 N1 N N1 N N N 0 0.239 -4.901 -1.779
27 O1 O O1 N N N 0 2.133 -3.96 -2.343
28 C2 C C2 N N N 0 -1.077 -4.913 -1.155
29 N2 N N2 N N N 0 -0.566 -2.632 -0.481
30 C3 C C3 N N N 0 -1.142 -3.902 -0.008
31 N3 N N3 N N N 0 -0.751 -0.361 -0.987
32 O3 O O3 N N N 0 -6.787 1.588 0.243
33 C4 C C4 N N N 0 0.842 -2.644 -0.903
34 C5 C C5 N N N 0 -1.301 -1.504 -0.53
35 O5 O O5 N N N 0 -2.459 -1.516 -0.162
36 C6 C C6 N N N 0 -1.395 0.85 -1.115
37 O6 O O6 N N N 0 -2.381 0.306 1.476
38 C7 C C7 S N N 0 0.706 1.293 -1.842
39 C8 C C8 R N N 0 0.641 -0.192 -1.436
40 C9 C C9 N N N 0 -2.924 -0.088 2.737
41 HD1 H HD1 N N N 0 3.019 -1.466 -1.567
42 HD2 H HD2 N N N 0 0.375 0.454 1.173
43 HD3 H HD3 N N N 0 3.192 2.085 -2.54
44 HD4 H HD4 N N N 0 0.44 2.117 0.717
45 HD5 H HD5 N N N 0 -3.383 1.738 -2.711
46 HE5 H HE5 N N N 0 -5.743 2.055 -2.11
47 HE1 H HE1 N N N 0 4.592 -1.925 0.271
48 HE2 H HE2 N N N 0 1.947 -0.002 3.012
49 HE4 H HE4 N N N 0 2.083 3.326 2.095
50 HE6 H HE6 N N N 0 -4.933 0.724 1.872
51 HZ2 H HZ2 N N N 0 4.283 3.914 1.157
52 HM11 H HM11 N N N 0 -8.664 2.168 -0.395
53 HM12 H HM12 N N N 0 -7.3 3.043 -1.132
54 HM13 H HM13 N N N 0 -7.651 1.367 -1.62
55 HM21 H HM21 N N N 0 -2.404 -1.403 4.363
56 HM22 H HM22 N N N 0 -1.889 -1.977 2.759
57 HM23 H HM23 N N N 0 -1.011 -0.648 3.553
58 HM31 H HM31 N N N 0 -3.732 1.862 3.165
59 HM32 H HM32 N N N 0 -3.48 0.84 4.6
60 HM33 H HM33 N N N 0 -2.087 1.594 3.79
61 HN1 H HN1 N N N 0 0.508 -5.689 -2.277
62 H21 H H21 N N N 0 -1.83 -4.658 -1.9
63 H7 H H7 N N N 0 0.952 1.392 -2.899
64 H22 H H22 N N N 0 -1.281 -5.911 -0.766
65 H31 H H31 N N N 0 -2.18 -3.747 0.287
66 H32 H H32 N N N 0 -0.569 -4.273 0.842
67 H41 H H41 N N N 0 1.48 -2.647 -0.019
68 H42 H H42 N N N 0 1.055 -1.762 -1.507
69 H8 H H8 N N N 0 0.851 -0.836 -2.29
70 H9 H H9 N N N 0 -3.904 -0.542 2.585