Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 4E8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N01 N N01 N Y N 0 5.902 -2.993 -0.064
2 C02 C C02 N Y N 0 5.007 -2.07 0.154
3 N03 N N03 N Y N 0 5.563 -0.857 -0.109
4 C04 C C04 N Y N 0 6.858 -1.086 -0.503
5 C05 C C05 N Y N 0 7.046 -2.418 -0.467
6 C1' C C1' N Y N 0 -5.249 -0.755 -0.28
7 N11 N N11 N Y N 0 5.618 1.479 -0.294
8 C12 C C12 N Y N 0 4.936 0.384 0.0
9 N13 N N13 N Y N 0 3.674 0.437 0.396
10 C14 C C14 N Y N 0 3.05 1.597 0.51
11 C15 C C15 N Y N 0 3.734 2.766 0.209
12 C16 C C16 N Y N 0 5.054 2.672 -0.202
13 C17 C C17 N N N 0 1.613 1.649 0.961
14 C18 C C18 N N N 0 0.761 0.761 0.052
15 N19 N N19 N N N 0 -0.64 0.811 0.491
16 C2' C C2' N Y N 0 -6.097 0.211 -0.787
17 C20 C C20 N N N 0 -1.49 -0.032 -0.36
18 C21 C C21 N N N 0 -2.938 0.046 0.127
19 C22 C C22 N N N 0 -3.822 -0.832 -0.76
20 C3' C C3' N Y N 0 -7.408 0.281 -0.345
21 C4' C C4' N Y N 0 -7.867 -0.616 0.604
22 C5' C C5' N Y N 0 -7.016 -1.581 1.11
23 C6' C C6' N Y N 0 -5.707 -1.647 0.672
24 F7' F F7' N N N 0 -8.238 1.225 -0.84
25 H02 H H02 N N N 0 3.993 -2.241 0.487
26 H04 H H04 N N N 0 7.585 -0.341 -0.788
27 H05 H H05 N N N 0 7.96 -2.936 -0.719
28 H15 H H15 N N N 0 3.248 3.727 0.293
29 H16 H H16 N N N 0 5.615 3.562 -0.444
30 H17 H H17 N N N 0 1.541 1.293 1.988
31 H17A H H17A N N N 0 1.252 2.676 0.907
32 H18 H H18 N N N 0 0.832 1.118 -0.975
33 H18A H H18A N N N 0 1.122 -0.266 0.106
34 HN19 H HN19 N N N 0 -0.724 0.547 1.461
35 H2' H H2' N N N 0 -5.738 0.911 -1.527
36 H20 H H20 N N N 0 -1.434 0.319 -1.391
37 H20A H H20A N N N 0 -1.144 -1.064 -0.309
38 H21 H H21 N N N 0 -2.994 -0.305 1.158
39 H21A H H21A N N N 0 -3.283 1.079 0.076
40 H22 H H22 N N N 0 -3.477 -1.864 -0.709
41 H22A H H22A N N N 0 -3.766 -0.481 -1.79
42 H4' H H4' N N N 0 -8.888 -0.562 0.949
43 H5' H H5' N N N 0 -7.374 -2.282 1.85
44 H6' H H6' N N N 0 -5.043 -2.402 1.068