Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 4VB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N Y N 0 -2.21 0.914 -0.286
2 C3 C C2 N Y N 0 -0.926 1.159 0.081
3 C11 C C3 N Y N 0 -2.355 -1.583 -0.415
4 C12 C C4 N Y N 0 -3.08 -2.742 -0.23
5 C14 C C5 N Y N 0 -4.916 -1.565 0.528
6 C15 C C6 N Y N 0 -4.261 -0.36 0.383
7 C16 C C7 N N N 0 2.496 0.139 0.324
8 C17 C C8 N N N 0 3.738 0.781 0.133
9 C18 C C9 N N N 0 4.821 0.056 -0.217
10 C20 C C10 N N N 0 3.568 -1.939 -0.216
11 C21 C C11 N N N 0 2.417 -1.233 0.147
12 N1 N N1 N Y N 0 -2.69 2.057 -0.859
13 C4 C C12 N Y N 0 -0.615 2.479 -0.271
14 N5 N N2 N Y N 0 -1.665 3.014 -0.829
15 C6 C C13 N N N 0 0.051 0.224 0.753
16 N7 N N3 N N N 0 1.378 0.865 0.689
17 C8 C C14 N N N 0 1.485 2.293 1.02
18 C9 C C15 N N N 0 0.73 3.119 -0.028
19 C10 C C16 N Y N 0 -2.949 -0.355 -0.104
20 N13 N N4 N Y N 0 -4.317 -2.702 0.227
21 N19 N N5 N N N 0 4.734 -1.289 -0.389
22 O22 O O1 N N N 0 3.516 -3.149 -0.377
23 H1 H H1 N N N 0 -1.343 -1.624 -0.789
24 H2 H H2 N N N 0 -2.629 -3.695 -0.463
25 H3 H H3 N N N 0 -5.93 -1.579 0.899
26 H4 H H4 N N N 0 -4.757 0.567 0.631
27 H5 H H5 N N N 0 3.822 1.85 0.267
28 H6 H H6 N N N 0 5.769 0.552 -0.362
29 H7 H H7 N N N 0 1.48 -1.75 0.286
30 H8 H H8 N N N 0 -3.581 2.184 -1.222
31 H9 H H9 N N N 0 -0.237 0.071 1.793
32 H10 H H10 N N N 0 0.073 -0.731 0.229
33 H11 H H11 N N N 0 1.052 2.471 2.004
34 H12 H H12 N N N 0 2.535 2.586 1.027
35 H13 H H13 N N N 0 1.299 3.138 -0.958
36 H14 H H14 N N N 0 0.59 4.136 0.339
37 H15 H H15 N N N 0 5.526 -1.79 -0.641