Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 56Z

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -6.755 0.698 -0.09
2 N1 N N1 N Y N 0 0.277 -0.881 0.127
3 O1 O O1 N N N 0 6.768 -1.376 -0.526
4 S1 S S1 N Y N 0 -1.665 0.663 0.337
5 C2 C C2 N Y N 0 -6.806 -0.579 0.455
6 N2 N N2 N N N 0 -0.616 -3.066 -0.123
7 O2 O O2 N N N 0 7.356 0.477 1.045
8 S2 S S2 N N N 0 6.718 -0.013 -0.126
9 C3 C C3 N Y N 0 -5.667 -1.352 0.511
10 N3 N N3 N N N 0 0.978 1.37 0.389
11 O3 O O3 N N N 0 -3.321 -2.894 0.073
12 C4 C C4 N Y N 0 -4.413 0.433 -0.529
13 C11 C C11 N N N 0 -3.236 -1.677 0.076
14 N4 N N4 N N N 0 7.324 0.868 -1.391
15 C5 C C5 N Y N 0 -5.556 1.201 -0.581
16 O6 O O6 N N N 0 -7.88 1.455 -0.148
17 C7 C C7 N N N 0 -7.756 2.759 -0.72
18 C10 C C10 N Y N 0 -4.46 -0.851 0.018
19 C12 C C12 N Y N 0 -1.972 -1.06 0.134
20 C13 C C13 N Y N 0 -0.748 -1.696 0.043
21 C14 C C14 N Y N 0 0.021 0.386 0.283
22 C15 C C15 N Y N 0 2.332 1.044 0.267
23 C16 C C16 N Y N 0 2.724 -0.009 -0.549
24 C17 C C17 N Y N 0 4.062 -0.329 -0.668
25 C18 C C18 N Y N 0 5.012 0.398 0.026
26 C19 C C19 N Y N 0 4.626 1.448 0.84
27 C20 C C20 N Y N 0 3.289 1.776 0.958
28 H2 H H2 N N N 0 -7.74 -0.966 0.836
29 HN2 H HN2 N N N 0 0.266 -3.465 -0.183
30 HN2A H HN2A N N N 0 -1.406 -3.626 -0.18
31 H3 H H3 N N N 0 -5.708 -2.345 0.934
32 HN3 H HN3 N N N 0 0.714 2.29 0.548
33 H4 H H4 N N N 0 -3.481 0.824 -0.912
34 HN4 H HN4 N N N 0 7.708 0.414 -2.158
35 HN4A H HN4A N N N 0 7.294 1.837 -1.366
36 H5 H H5 N N N 0 -5.52 2.194 -1.004
37 H7 H H7 N N N 0 -7.408 2.672 -1.75
38 H7A H H7A N N N 0 -8.726 3.256 -0.706
39 H7B H H7B N N N 0 -7.04 3.343 -0.143
40 H16 H H16 N N N 0 1.982 -0.578 -1.091
41 H17 H H17 N N N 0 4.367 -1.148 -1.302
42 H19 H H19 N N N 0 5.37 2.013 1.381
43 H20 H H20 N N N 0 2.989 2.598 1.591