Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5BV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O34 O O34 N N N 0 2.07 1.096 -1.065
2 O35 O O35 N N N 0 0.792 0.575 0.66
3 O O O46 N N N 0 3.569 -1.954 -0.704
4 N N N31 N N N 0 2.873 3.469 -0.287
5 C32 C C32 N N N 0 1.967 2.746 0.614
6 C33 C C33 N N N 0 1.614 1.412 0.008
7 C36 C C36 R N N 0 0.496 -0.693 0.017
8 C37 C C37 N N N 0 -0.904 -1.157 0.425
9 C38 C C38 N N N 0 -1.945 -0.175 -0.116
10 C39 C C39 N N N 0 -3.345 -0.639 0.292
11 C40 C C40 N N N 0 -4.386 0.343 -0.249
12 C41 C C41 N N N 0 -5.785 -0.121 0.159
13 C42 C C42 N N N 0 -6.826 0.861 -0.382
14 C43 C C43 R N N 0 1.526 -1.738 0.449
15 C44 C C44 N N N 0 1.214 -3.073 -0.229
16 C C C45 N N N 0 2.904 -1.28 0.048
17 H H H1 N N N 0 2.466 3.57 -1.205
18 H5 H H5 N N N 0 1.058 3.33 0.762
19 H2 H H2 N N Y 0 3.125 4.367 0.097
20 H4 H H4 N N N 0 2.458 2.59 1.575
21 H6 H H6 N N N 0 0.536 -0.569 -1.065
22 H7 H H7 N N N 0 -1.092 -2.149 0.014
23 H8 H H8 N N N 0 -0.971 -1.195 1.512
24 H9 H H9 N N N 0 -1.757 0.817 0.295
25 H10 H H10 N N N 0 -1.878 -0.136 -1.203
26 H11 H H11 N N N 0 -3.533 -1.631 -0.119
27 H12 H H12 N N N 0 -3.412 -0.678 1.379
28 H13 H H13 N N N 0 -4.198 1.335 0.162
29 H14 H H14 N N N 0 -4.318 0.381 -1.337
30 H15 H H15 N N N 0 -5.973 -1.113 -0.252
31 H16 H H16 N N N 0 -5.853 -0.16 1.246
32 H17 H H17 N N N 0 -6.638 1.852 0.029
33 H18 H H18 N N N 0 -6.759 0.899 -1.469
34 H19 H H19 N N N 0 -7.823 0.53 -0.092
35 H20 H H20 N N N 0 1.485 -1.862 1.532
36 H21 H H21 N N N 0 1.254 -2.949 -1.311
37 H22 H H22 N N N 0 1.948 -3.818 0.08
38 H23 H H23 N N N 0 0.216 -3.404 0.062
39 OXT O O1 N N Y 0 3.394 -0.125 0.525
40 HXT H H3 N N Y 0 4.283 0.126 0.239