Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5ED

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 73


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -4.591 -4.043 0.047
2 C4 C C1 N Y N 0 1.69 2.637 1.012
3 C5 C C2 N Y N 0 2.73 2.729 0.106
4 C6 C C3 N Y N 0 3.956 3.225 0.508
5 C8 C C5 N Y N 0 3.102 3.539 2.723
6 C10 C C6 S N N 0 -3.431 -0.108 0.917
7 C13 C C7 N N N 0 -4.783 -2.715 -0.04
8 C15 C C8 N N N 0 -5.286 1.445 0.477
9 C17 C C9 N N N 0 -1.042 0.045 0.463
10 C20 C C10 N N N 0 2.604 -0.152 0.289
11 C22 C C11 N N N 0 3.609 -0.795 -0.612
12 C24 C C12 N N N 0 9.703 -2.345 -0.812
13 C26 C C13 N N N 0 -5.11 -3.319 2.274
14 C1 C C14 N N N 0 8.284 -2.16 -1.355
15 C2 C C15 S N N 0 0.332 0.575 0.784
16 C3 C C16 N N N 0 0.356 2.091 0.574
17 C9 C C17 N Y N 0 1.876 3.042 2.32
18 C11 C C18 N N N 0 -3.549 -1.415 1.703
19 C12 C C19 S N N 0 -4.865 -2.109 1.344
20 C14 C C20 N N N 0 -4.501 0.85 1.372
21 C16 C C21 N N N 0 -4.843 1.573 -0.919
22 C18 C C22 N N N 0 -5.183 2.154 -3.21
23 C23 C C23 N N N 0 7.256 -1.502 -0.434
24 C25 C C24 N N N 0 -4.512 -4.479 1.446
25 O3 O O1 N N N 0 -3.715 1.246 -1.231
26 O2 O O2 N N N 0 -5.688 2.054 -1.852
27 C19 C C25 N N N 0 -6.276 2.716 -4.121
28 O1 O O3 N N N 0 -4.876 -2.093 -1.077
29 N N N2 N N N 0 -2.112 0.486 1.153
30 O4 O O4 N N N 0 -1.184 -0.778 -0.417
31 N2 N N3 N N N 0 1.317 -0.055 -0.099
32 O21 O O5 N N N 0 2.947 0.283 1.368
33 O5 O O6 N N N 0 3.266 -1.23 -1.691
34 N6 N N4 N N N 0 4.897 -0.891 -0.224
35 C21 C C26 N N N 0 5.882 -1.521 -1.107
36 C27 C C27 N N N 0 9.425 -1.286 -1.881
37 H1 H H1 N N N 0 -4.518 -4.636 -0.716
38 H2 H H2 N N N 0 2.585 2.412 -0.916
39 H3 H H3 N N N 0 4.769 3.295 -0.199
40 H4 H H4 N N N 0 5.1 4.017 2.132
41 H5 H H5 N N N 0 3.247 3.856 3.745
42 H6 H H6 N N N 0 -3.553 -0.311 -0.147
43 H7 H H7 N N N 0 -6.249 1.833 0.775
44 H9 H H9 N N N 0 9.903 -1.998 0.201
45 H10 H H10 N N N 0 10.246 -3.239 -1.119
46 H11 H H11 N N N 0 -4.578 -3.2 3.218
47 H12 H H12 N N N 0 -6.176 -3.471 2.445
48 H13 H H13 N N N 0 7.895 -2.932 -2.019
49 H14 H H14 N N N 0 0.576 0.348 1.821
50 H15 H H15 N N N 0 -0.437 2.551 1.164
51 H16 H H16 N N N 0 0.2 2.314 -0.481
52 H17 H H17 N N N 0 1.063 2.971 3.028
53 H18 H H18 N N N 0 -2.713 -2.068 1.45
54 H19 H H19 N N N 0 -3.532 -1.2 2.771
55 H20 H H20 N N N 0 -5.695 -1.405 1.403
56 H21 H H21 N N N 0 -4.632 1.054 2.424
57 H23 H H23 N N N 0 -4.318 2.817 -3.228
58 H24 H H24 N N N 0 -4.89 1.165 -3.562
59 H25 H H25 N N N 0 7.207 -2.05 0.507
60 H26 H H26 N N N 0 7.55 -0.471 -0.238
61 H27 H H27 N N N 0 -5.101 -5.384 1.593
62 H28 H H28 N N N 0 -3.474 -4.654 1.729
63 H29 H H29 N N N 0 -6.569 3.705 -3.769
64 H30 H H30 N N N 0 -5.897 2.79 -5.14
65 H31 H H31 N N N 0 -7.141 2.053 -4.103
66 H32 H H32 N N N 0 -2.01 1.196 1.805
67 H33 H H33 N N N 0 1.043 -0.403 -0.962
68 H34 H H34 N N N 0 5.171 -0.543 0.639
69 H35 H H35 N N N 0 5.93 -0.973 -2.048
70 H36 H H36 N N N 0 5.587 -2.553 -1.302
71 H37 H H37 N N N 0 9.443 -0.241 -1.57
72 H38 H H38 N N N 0 9.786 -1.482 -2.89
73 C7 C C4 N Y N 0 4.142 3.63 1.817