Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 5IY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N01 N N1 N N N 0 3.613 1.055 0.359
2 C02 C C1 N Y N 0 2.317 0.643 0.098
3 N03 N N2 N Y N 0 1.885 -0.573 0.205
4 C04 C C2 N Y N 0 0.598 -0.785 -0.087
5 C05 C C3 N N N 0 -0.02 -2.116 -0.008
6 O06 O O1 N N N 0 -1.196 -2.258 -0.284
7 O07 O O2 N N N 0 0.716 -3.18 0.371
8 C08 C C4 N Y N 0 -0.092 0.315 -0.461
9 C09 C C5 N N N 0 -1.55 0.356 -0.842
10 C10 C C6 N N N 0 -2.396 0.609 0.408
11 C11 C C7 N N N 0 -2.083 2.0 0.962
12 C12 C C8 N N N 0 -3.88 0.527 0.044
13 S13 S S1 N Y N 0 1.003 1.694 -0.42
14 H1 H H1 N N N 0 4.278 0.41 0.645
15 H2 H H2 N N N 0 3.856 1.987 0.25
16 H3 H H3 N N N 0 0.266 -4.035 0.409
17 H4 H H4 N N N 0 -1.715 1.158 -1.561
18 H5 H H5 N N N 0 -1.836 -0.597 -1.287
19 H6 H H6 N N N 0 -2.164 -0.143 1.162
20 H7 H H7 N N N 0 -1.026 2.059 1.221
21 H8 H H8 N N N 0 -2.314 2.752 0.208
22 H9 H H9 N N N 0 -2.686 2.181 1.852
23 H10 H H10 N N N 0 -4.111 1.279 -0.71
24 H11 H H11 N N N 0 -4.103 -0.464 -0.351
25 H12 H H12 N N N 0 -4.483 0.707 0.934