Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5LH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 79


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C26 C C8 N N N 0 -1.86 1.58 -1.432
2 O27 O O1 N N N 0 -2.143 2.619 -1.995
3 O35 O O2 N N N 0 -2.797 0.627 -1.266
4 C1 C C21 N N N 0 -4.125 0.912 -1.78
5 C2 C C27 N Y N 0 -5.032 -0.26 -1.505
6 C3 C C22 N Y N 0 -5.751 -0.316 -0.326
7 C4 C C23 N Y N 0 -6.583 -1.391 -0.075
8 C5 C C24 N Y N 0 -6.696 -2.41 -1.002
9 C6 C C25 N Y N 0 -5.977 -2.354 -2.181
10 C7 C C26 N Y N 0 -5.148 -1.276 -2.435
11 N16 N N1 N N N 0 -0.723 -2.568 2.516
12 C17 C C1 N N N 0 -1.329 -1.461 3.294
13 C18 C C2 N N N 0 -2.1 -0.555 2.331
14 C19 C C3 N N N 0 -2.467 0.749 3.042
15 N20 N N2 N Y N 0 -1.939 1.885 2.283
16 C21 C C4 N Y N 0 -0.98 1.825 1.329
17 C22 C C5 N Y N 0 -0.802 3.094 0.893
18 C23 C C6 N N N 0 0.16 3.556 -0.17
19 C24 C C7 S N N 0 0.412 2.415 -1.158
20 N25 N N3 N N N 0 -0.607 1.379 -0.978
21 C36 C C9 N N N 0 1.777 1.827 -0.909
22 O37 O O3 N N N 0 2.305 1.923 0.179
23 N38 N N4 N Y N 0 -1.649 3.858 1.593
24 N39 N N5 N Y N 0 -2.307 3.112 2.408
25 N11 N N6 N N N 0 2.408 1.181 -1.938
26 C06 C C10 S N N 0 3.744 0.632 -1.603
27 C05 C C11 N N N 0 3.616 -0.859 -1.42
28 O12 O O4 N N N 0 3.719 -1.606 -2.37
29 C07 C C12 N N N 0 4.25 1.267 -0.306
30 C08 C C13 N N N 0 5.719 0.894 -0.096
31 C10 C C14 N N N 0 6.568 1.52 -1.204
32 C09 C C15 N N N 0 6.188 1.417 1.263
33 N04 N N7 N N N 0 3.385 -1.353 -0.172
34 C03 C C16 S N N 0 3.265 -2.822 -0.062
35 C13 C C17 N N N 0 2.773 -3.173 1.343
36 C14 C C18 N N N 0 1.263 -3.416 1.309
37 C15 C C19 N N N 0 0.565 -2.347 2.11
38 O40 O O5 N N N 0 1.131 -1.31 2.384
39 C02 C C20 N N N 0 2.263 -3.333 -1.099
40 O01 O O6 N N N 0 2.022 -4.725 -0.882
41 H13 H H13 N N N 0 -4.521 1.801 -1.289
42 H34 H H34 N N N 0 -4.069 1.085 -2.855
43 H35 H H35 N N N 0 -5.663 0.48 0.398
44 H36 H H36 N N N 0 -7.145 -1.435 0.847
45 H37 H H37 N N N 0 -7.345 -3.25 -0.805
46 H38 H H38 N N N 0 -6.064 -3.15 -2.906
47 H39 H H39 N N N 0 -4.586 -1.232 -3.356
48 H2 H H2 N N N 0 -2.011 -1.868 4.04
49 H3 H H3 N N N 0 -0.544 -0.889 3.789
50 H4 H H4 N N N 0 -1.479 -0.334 1.464
51 H5 H H5 N N N 0 -3.01 -1.061 2.007
52 H6 H H6 N N N 0 -3.552 0.832 3.112
53 H7 H H7 N N N 0 -2.037 0.75 4.044
54 H8 H H8 N N N 0 -0.461 0.943 0.986
55 H10 H H10 N N N 0 -0.266 4.408 -0.7
56 H9 H H9 N N N 0 1.101 3.85 0.294
57 H11 H H11 N N N 0 0.363 2.8 -2.177
58 H1 H H1 N N N 0 -1.201 -3.388 2.314
59 H12 H H12 N N N 0 -0.38 0.547 -0.533
60 H14 H H14 N N N 0 2.011 1.09 -2.818
61 H15 H H15 N N N 0 4.44 0.843 -2.414
62 H16 H H16 N N N 0 4.156 2.351 -0.372
63 H17 H H17 N N N 0 3.658 0.902 0.533
64 H18 H H18 N N N 0 5.826 -0.19 -0.124
65 H19 H H19 N N N 0 6.299 1.077 -2.162
66 H20 H H20 N N N 0 6.387 2.595 -1.237
67 H21 H H21 N N N 0 7.623 1.336 -1.001
68 H22 H H22 N N N 0 5.583 0.971 2.053
69 H23 H H23 N N N 0 7.234 1.152 1.414
70 H24 H H24 N N N 0 6.081 2.502 1.292
71 H25 H H25 N N N 0 3.303 -0.774 0.601
72 H26 H H26 N N N 0 4.237 -3.282 -0.236
73 H27 H H27 N N N 0 3.278 -4.074 1.691
74 H28 H H28 N N N 0 2.992 -2.348 2.022
75 H29 H H29 N N N 0 0.913 -3.389 0.277
76 H30 H H30 N N N 0 1.042 -4.392 1.742
77 H31 H H31 N N N 0 1.326 -2.783 -1.002
78 H32 H H32 N N N 0 2.668 -3.186 -2.1
79 H33 H H33 N N N 0 1.395 -5.117 -1.505