Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 5LR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 3.297 -0.401 0.016
2 C7 C C2 N N N 0 0.963 -0.738 -0.061
3 C8 C C3 N N N 0 -1.453 -1.221 -0.114
4 C11 C C4 N N N 0 -5.444 0.243 0.636
5 C12 C C5 N Y N 0 -6.785 0.904 0.456
6 C15 C C6 N Y N 0 -9.229 2.182 0.19
7 C18 C C7 N N N 0 -7.529 -0.911 -1.127
8 C19 C C8 N N N 0 -6.331 -1.662 -0.545
9 O1 O O1 N N N 0 3.181 -2.388 1.676
10 S S S1 N N N 0 2.868 -2.102 0.32
11 O O O2 N N N 0 3.332 -2.866 -0.785
12 C3 C C9 N Y N 0 4.63 0.222 -0.023
13 C2 C C10 N Y N 0 4.973 1.082 -1.072
14 C1 C C11 N Y N 0 6.223 1.662 -1.102
15 C20 C C12 N Y N 0 5.558 -0.038 0.99
16 C21 C C13 N Y N 0 6.805 0.549 0.946
17 C C C14 N Y N 0 7.139 1.395 -0.098
18 CL CL CL1 N N N 0 8.711 2.129 -0.146
19 N2 N N1 N N N 0 1.204 -1.992 0.197
20 C5 C C15 N N N 0 2.087 0.171 -0.175
21 C6 C C16 N N N 0 1.919 1.639 -0.472
22 N N N2 N N N 0 -0.331 -0.286 -0.227
23 C9 C C17 N N N 0 -2.767 -0.47 -0.34
24 C10 C C18 N N N 0 -3.939 -1.446 -0.221
25 N1 N N3 N N N 0 -5.201 -0.726 -0.438
26 C17 C C22 N Y N 0 -7.036 2.085 1.139
27 C13 C C19 N Y N 0 -7.757 0.367 -0.36
28 C14 C C20 N Y N 0 -8.98 1.007 -0.491
29 C16 C C21 N Y N 0 -8.253 2.723 1.007
30 H1 H H1 N N N 0 -1.35 -2.006 -0.863
31 H2 H H2 N N N 0 -1.456 -1.667 0.881
32 H3 H H3 N N N 0 -4.663 1.003 0.617
33 H7 H H7 N N N 0 -8.418 -1.538 -1.058
34 H4 H H4 N N N 0 -5.421 -0.271 1.596
35 H5 H H5 N N N 0 -10.182 2.677 0.085
36 H6 H H6 N N N 0 -7.335 -0.675 -2.173
37 H8 H H8 N N N 0 -6.584 -2.045 0.443
38 H9 H H9 N N N 0 -6.062 -2.487 -1.204
39 H12 H H12 N N N 0 4.26 1.291 -1.855
40 H13 H H13 N N N 0 6.489 2.327 -1.911
41 H14 H H14 N N N 0 5.298 -0.697 1.805
42 H15 H H15 N N N 0 7.522 0.349 1.728
43 H17 H H17 N N N 0 1.906 1.792 -1.551
44 H18 H H18 N N N 0 0.98 1.991 -0.043
45 H19 H H19 N N N 0 2.749 2.195 -0.036
46 H20 H H20 N N N 0 -0.497 0.65 -0.419
47 H22 H H22 N N N 0 -2.871 0.314 0.41
48 H23 H H23 N N N 0 -2.764 -0.025 -1.334
49 H24 H H24 N N N 0 -3.836 -2.231 -0.971
50 H25 H H25 N N N 0 -3.942 -1.892 0.774
51 H27 H H27 N N N 0 -9.742 0.585 -1.129
52 H28 H H28 N N N 0 -8.443 3.642 1.541
53 H29 H H29 N N N 0 -6.275 2.508 1.778