Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5T1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C23 C C1 N N N 0 -9.072 3.773 0.028
2 O3 O O1 N N N 0 -8.267 2.595 -0.048
3 C22 C C2 N N N 0 -8.027 1.972 1.215
4 C21 C C3 N N N 0 -7.159 0.728 1.014
5 O2 O O2 N N N 0 -5.871 1.119 0.534
6 C19 C C4 N Y N 0 -4.972 0.126 0.302
7 C20 C C5 N Y N 0 -3.699 0.431 -0.159
8 C15 C C6 N Y N 0 -2.813 -0.626 -0.376
9 C16 C C7 N N N 0 -1.447 -0.41 -0.863
10 O1 O O3 N N N 0 -1.046 0.716 -1.092
11 C18 C C8 N Y N 0 -5.32 -1.203 0.531
12 N7 N N1 N Y N 0 -4.471 -2.185 0.316
13 C14 C C9 N Y N 0 -3.239 -1.951 -0.121
14 C13 C C10 N N N 0 -2.286 -3.037 -0.359
15 C12 C C11 N N N 0 -1.053 -2.751 -0.806
16 N6 N N2 N N N 0 -0.641 -1.474 -1.052
17 C11 C C12 R N N 0 0.724 -1.251 -1.538
18 C17 C C13 N N N 0 0.916 -1.981 -2.869
19 C10 C C14 N Y N 0 1.709 -1.779 -0.528
20 N1 N N3 N Y N 0 2.834 -1.148 -0.095
21 C5 C C15 N Y N 0 3.408 0.055 -0.387
22 N5 N N4 N Y N 0 1.637 -2.926 0.097
23 N4 N N5 N Y N 0 2.64 -3.066 0.891
24 C4 C C16 N Y N 0 3.415 -1.996 0.814
25 C3 C C17 N Y N 0 4.617 -1.624 1.454
26 F1 F F1 N N N 0 5.198 -2.452 2.349
27 C2 C C18 N Y N 0 5.186 -0.424 1.159
28 C1 C C19 N Y N 0 4.566 0.431 0.218
29 C6 C C20 N Y N 0 5.182 1.743 -0.109
30 C8 C C21 N Y N 0 5.339 2.794 0.745
31 C7 C C22 N Y N 0 5.714 2.124 -1.356
32 N2 N N6 N Y N 0 6.162 3.347 -1.249
33 N3 N N7 N Y N 0 5.938 3.79 0.06
34 C9 C C23 N N N 0 6.296 5.107 0.594
35 H1 H H1 N N N 0 -10.044 3.521 0.452
36 H2 H H2 N N N 0 -8.579 4.51 0.661
37 H3 H H3 N N N 0 -9.208 4.186 -0.972
38 H4 H H4 N N N 0 -7.512 2.672 1.873
39 H5 H H5 N N N 0 -8.977 1.683 1.664
40 H6 H H6 N N N 0 -7.049 0.204 1.963
41 H7 H H7 N N N 0 -7.633 0.068 0.287
42 H8 H H8 N N N 0 -3.404 1.453 -0.345
43 H9 H H9 N N N 0 -6.311 -1.433 0.894
44 H10 H H10 N N N 0 -2.574 -4.062 -0.176
45 H11 H H11 N N N 0 -0.361 -3.562 -0.976
46 H12 H H12 N N N 0 0.888 -0.183 -1.682
47 H13 H H13 N N N 0 1.931 -1.815 -3.23
48 H14 H H14 N N N 0 0.752 -3.049 -2.724
49 H15 H H15 N N N 0 0.204 -1.599 -3.599
50 H16 H H16 N N N 0 2.94 0.712 -1.105
51 H17 H H17 N N N 0 6.105 -0.127 1.64
52 H18 H H18 N N N 0 5.038 2.825 1.782
53 H19 H H19 N N N 0 5.747 1.512 -2.245
54 H20 H H20 N N N 0 7.305 5.07 1.004
55 H21 H H21 N N N 0 6.255 5.846 -0.205
56 H22 H H22 N N N 0 5.594 5.382 1.381