Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5X7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 73


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 6.89 0.526 -0.132
2 N3 N N2 N N N 0 1.413 -0.445 0.14
3 C4 C C1 N N N 0 9.053 2.507 0.821
4 C5 C C2 N N N 0 7.161 1.862 -0.682
5 C6 C C3 N Y N 0 5.513 0.282 -0.064
6 C7 C C4 N Y N 0 5.046 -0.927 0.435
7 C8 C C5 N Y N 0 3.688 -1.168 0.503
8 C10 C C6 N N N 0 0.463 0.61 -0.219
9 C13 C C7 N Y N 0 -2.892 -0.237 1.293
10 C15 C C8 N Y N 0 -2.873 -0.986 -0.982
11 C17 C C9 N N N 0 -4.932 -1.37 0.388
12 C20 C C10 R N N 0 -8.203 0.247 -0.543
13 C21 C C11 R N N 0 -8.144 1.453 0.4
14 C22 C C12 S N N 0 -6.7 1.954 0.485
15 C24 C C13 N Y N 0 3.256 1.01 -0.421
16 C26 C C14 N N N 0 7.564 -0.488 -0.956
17 C1 C C15 N N N 0 9.612 -0.786 0.448
18 C11 C C16 N Y N 0 -0.945 0.095 -0.061
19 C12 C C17 N Y N 0 -1.601 0.235 1.148
20 C14 C C18 N Y N 0 -3.527 -0.85 0.229
21 C16 C C19 N Y N 0 -1.584 -0.508 -1.128
22 C18 C C20 R N N 0 -7.257 -0.842 -0.031
23 C19 C C21 N N N 0 -7.298 -2.04 -0.981
24 C2 C C22 S N N 0 9.075 -0.271 -0.891
25 C23 C C23 N N N 0 -5.798 0.816 0.968
26 C25 C C24 N Y N 0 4.614 1.25 -0.489
27 C3 C C25 R N N 0 8.66 2.146 -0.615
28 C9 C C26 N Y N 0 2.789 -0.201 0.072
29 N2 N N3 N N N 1 3.191 -2.457 1.033
30 N4 N N4 N N N 0 -5.889 -0.313 0.032
31 O1 O O1 N N N 0 9.437 1.075 -1.106
32 O2 O O2 N N N -1 3.756 -2.988 1.973
33 O3 O O3 N N N 0 2.216 -2.987 0.531
34 O4 O O4 N N N 0 -6.96 -1.612 -2.302
35 O5 O O5 N N N 0 -9.538 -0.261 -0.585
36 O6 O O6 N N N 0 -8.982 2.494 -0.105
37 O7 O O7 N N N 0 -6.628 3.045 1.406
38 H1 H H1 N N N 0 1.087 -1.314 0.425
39 H2 H H2 N N N 0 8.812 1.675 1.483
40 H3 H H3 N N N 0 10.123 2.708 0.865
41 H4 H H4 N N N 0 8.502 3.394 1.136
42 H5 H H5 N N N 0 6.826 1.901 -1.719
43 H6 H H6 N N N 0 6.62 2.61 -0.101
44 H7 H H7 N N N 0 5.745 -1.679 0.77
45 H8 H H8 N N N 0 0.61 1.47 0.436
46 H9 H H9 N N N 0 0.626 0.91 -1.254
47 H10 H H10 N N N 0 -3.403 -0.131 2.238
48 H11 H H11 N N N 0 -3.369 -1.465 -1.813
49 H12 H H12 N N N 0 -5.079 -2.228 -0.268
50 H13 H H13 N N N 0 -5.093 -1.672 1.423
51 H14 H H14 N N N 0 -7.898 0.553 -1.544
52 H15 H H15 N N N 0 -8.488 1.157 1.391
53 H16 H H16 N N N 0 -6.371 2.286 -0.499
54 H17 H H17 N N N 0 2.557 1.763 -0.752
55 H18 H H18 N N N 0 7.319 -1.482 -0.58
56 H19 H H19 N N N 0 7.225 -0.399 -1.989
57 H20 H H20 N N N 0 9.395 -1.85 0.541
58 H21 H H21 N N N 0 10.69 -0.63 0.491
59 H22 H H22 N N N 0 9.133 -0.245 1.264
60 H23 H H23 N N N 0 -1.105 0.714 1.979
61 H24 H H24 N N N 0 -1.075 -0.609 -2.075
62 H25 H H25 N N N 0 -7.571 -1.157 0.964
63 H26 H H26 N N N 0 -6.582 -2.792 -0.649
64 H27 H H27 N N N 0 -8.3 -2.468 -0.984
65 H28 H H28 N N N 0 9.534 -0.886 -1.687
66 H29 H H29 N N N 0 -4.767 1.165 1.017
67 H30 H H30 N N N 0 -6.119 0.493 1.959
68 H31 H H31 N N N 0 4.977 2.193 -0.873
69 H32 H H32 N N N 0 8.859 3.035 -1.242
70 H34 H H34 N N N 0 -6.965 -2.321 -2.959
71 H35 H H35 N N N 0 -10.192 0.377 -0.899
72 H36 H H36 N N N 0 -8.993 3.291 0.444
73 H37 H H37 N N N 0 -5.74 3.413 1.51