Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5Y4

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 62


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -2.871 3.786 1.073
2 C2 C C2 N Y N 0 -2.265 1.909 -0.26
3 C3 C C3 N Y N 0 -0.915 2.203 -0.15
4 N6 N N1 N Y N 0 4.728 -2.631 0.532
5 C7 C C4 N Y N 0 -2.669 0.697 -0.82
6 C8 C C5 N N N 0 -4.432 0.276 -2.341
7 C9 C C6 N N N 0 -4.366 -0.824 -0.185
8 C10 C C7 N N N 0 -5.887 -0.984 -0.121
9 C11 C C8 N N N 0 -7.659 -2.268 0.914
10 C12 C C9 N N N 0 -5.773 -3.402 -0.096
11 C13 C C10 N Y N 0 2.306 0.574 -0.239
12 C14 C C11 N Y N 0 3.68 0.85 -0.25
13 C15 C C12 N Y N 0 4.565 -0.162 -0.003
14 C16 C C13 N Y N 0 2.737 -1.645 0.252
15 C19 C C14 N N N 0 1.304 -3.702 0.643
16 N7 N N2 N N N 0 0.312 -4.25 0.726
17 C20 C C15 N N N 0 6.427 1.412 -0.354
18 C21 C C16 N N N 0 7.531 1.999 0.527
19 C22 C C17 N N N 0 7.859 1.508 -0.884
20 C17 C C18 N Y N 0 2.554 -3.012 0.538
21 C18 C C19 N Y N 0 3.837 -3.57 0.702
22 N3 N N6 N N N 0 1.396 1.587 -0.487
23 N4 N N3 N Y N 0 4.085 -1.421 0.25
24 N8 N N4 N N N 0 5.922 0.081 -0.008
25 N5 N N5 N Y N 0 1.877 -0.655 0.009
26 C4 C C20 N Y N 0 0.031 1.291 -0.598
27 C5 C C21 N Y N 0 -0.374 0.085 -1.154
28 C6 C C22 N Y N 0 -1.72 -0.211 -1.265
29 N N N7 N N N 0 -3.222 2.825 0.196
30 O O O1 N N N 0 -1.752 3.801 1.541
31 C C C23 N N N 0 -3.867 4.846 1.467
32 N1 N N8 N N N 0 -4.033 0.396 -0.932
33 N2 N N9 N N N 0 -6.22 -2.204 0.626
34 H1 H H1 N N N 0 -0.6 3.141 0.282
35 H2 H H2 N N N 0 -3.858 -0.521 -2.814
36 H3 H H3 N N N 0 -5.495 0.043 -2.399
37 H4 H H4 N N N 0 -4.238 1.218 -2.855
38 H5 H H5 N N N 0 -3.966 -0.752 0.826
39 H6 H H6 N N N 0 -3.931 -1.688 -0.687
40 H7 H H7 N N N 0 -6.322 -0.12 0.382
41 H8 H H8 N N N 0 -6.287 -1.056 -1.132
42 H9 H H9 N N N 0 -7.878 -3.181 1.468
43 H10 H H10 N N N 0 -7.95 -1.403 1.51
44 H11 H H11 N N N 0 -8.217 -2.269 -0.022
45 H12 H H12 N N N 0 -6.315 -3.481 -1.039
46 H13 H H13 N N N 0 -4.704 -3.328 -0.296
47 H14 H H14 N N N 0 -5.969 -4.286 0.51
48 H15 H H15 N N N 0 4.036 1.85 -0.45
49 H16 H H16 N N N 0 5.691 2.102 -0.766
50 H17 H H17 N N N 0 7.521 3.076 0.696
51 H18 H H18 N N N 0 7.881 1.396 1.365
52 H19 H H19 N N N 0 8.425 0.581 -0.975
53 H20 H H20 N N N 0 8.065 2.261 -1.644
54 H21 H H21 N N N 0 4.049 -4.604 0.931
55 H22 H H22 N N N 0 6.542 -0.63 0.217
56 H23 H H23 N N N 0 1.703 2.502 -0.585
57 H24 H H24 N N N 0 0.364 -0.624 -1.501
58 H25 H H25 N N N 0 -2.032 -1.149 -1.698
59 H26 H H26 N N N 0 -4.138 2.768 -0.12
60 H27 H H27 N N N 0 -4.429 4.511 2.339
61 H28 H H28 N N N 0 -3.339 5.769 1.708
62 H29 H H29 N N N 0 -4.553 5.026 0.64