Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5YS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N N N 0 -0.172 2.039 -0.351
2 C4 C C2 R N N 0 -2.562 1.57 -0.295
3 C6 C C3 N N N 0 -3.2 2.869 0.203
4 C7 C C4 N Y N 0 -3.401 0.398 0.147
5 C8 C C5 N Y N 0 -3.295 -0.079 1.44
6 C11 C C6 N Y N 0 -5.046 -1.278 -0.335
7 C16 C C7 N N N 0 1.32 1.061 1.326
8 C17 C C8 N N N 0 2.315 -0.062 1.015
9 C18 C C9 N N N 0 3.579 0.539 0.396
10 C19 C C10 N N N 0 3.221 1.243 -0.915
11 C21 C C11 N Y N 0 4.574 -0.559 0.12
12 C23 C C12 N Y N 0 5.198 -2.591 -0.967
13 O1 O O1 N N N 0 -0.363 2.756 -1.314
14 N3 N N1 N N N 0 -1.214 1.444 0.263
15 C9 C C13 N Y N 0 -4.062 -1.154 1.848
16 C10 C C14 N Y N 0 -4.938 -1.754 0.964
17 O12 O O2 N N N 0 -5.906 -1.866 -1.206
18 C13 C C15 N N N 0 -6.669 -2.972 -0.719
19 C14 C C16 N Y N 0 -4.278 -0.195 -0.74
20 N15 N N2 N N N 0 1.082 1.834 0.099
21 C20 C C17 N N N 0 2.236 2.381 -0.627
22 C22 C C18 N Y N 0 4.26 -1.602 -0.738
23 N24 N N3 N Y N 0 6.378 -2.551 -0.379
24 C25 C C19 N Y N 0 6.712 -1.572 0.438
25 C26 C C20 N Y N 0 5.826 -0.548 0.715
26 H1 H H1 N N N 0 -2.505 1.587 -1.383
27 H2 H H2 N N N 0 -4.204 2.963 -0.212
28 H3 H H3 N N N 0 -3.257 2.852 1.291
29 H5 H H5 N N N 0 -2.611 0.389 2.133
30 H4 H H4 N N N 0 -2.594 3.717 -0.116
31 H6 H H6 N N N 0 0.381 0.631 1.675
32 H10 H H10 N N N 0 4.016 1.259 1.087
33 H7 H H7 N N N 0 1.734 1.714 2.095
34 H8 H H8 N N N 0 2.574 -0.583 1.937
35 H9 H H9 N N N 0 1.864 -0.764 0.314
36 H11 H H11 N N N 0 4.125 1.65 -1.368
37 H12 H H12 N N N 0 2.761 0.529 -1.598
38 H13 H H13 N N N 0 4.959 -3.409 -1.63
39 H14 H H14 N N N 0 -1.071 0.932 1.074
40 H15 H H15 N N N 0 -3.978 -1.525 2.859
41 H16 H H16 N N N 0 -5.537 -2.594 1.283
42 H17 H H17 N N N 0 -5.994 -3.764 -0.394
43 H18 H H18 N N N 0 -7.281 -2.648 0.123
44 H19 H H19 N N N 0 -7.314 -3.347 -1.513
45 H20 H H20 N N N 0 -4.364 0.181 -1.749
46 H21 H H21 N N N 0 2.725 3.141 -0.017
47 H22 H H22 N N N 0 1.902 2.822 -1.566
48 H23 H H23 N N N 0 3.295 -1.641 -1.222
49 H24 H H24 N N N 0 7.688 -1.573 0.901
50 H25 H H25 N N N 0 6.106 0.252 1.385