Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6DV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 4.823 -1.323 -1.108
2 C13 C C2 N N N 0 2.737 -0.425 0.635
3 C15 C C3 N Y N 0 6.585 1.001 -0.897
4 C17 C C4 N Y N 0 8.816 1.311 -0.079
5 C20 C C5 N Y N 0 7.381 -0.303 0.961
6 C25 C C6 N Y N 0 -6.768 0.147 0.088
7 C23 C C7 N Y N 0 -4.738 -0.617 -0.079
8 C19 C C8 N Y N 0 8.604 0.338 0.883
9 C16 C C9 N Y N 0 7.808 1.642 -0.967
10 C12 C C10 N N N 0 4.058 0.332 0.484
11 C14 C C11 N Y N 0 6.367 0.028 0.068
12 N01 N N1 N N N 0 -3.371 2.734 -0.079
13 C02 C C12 N Y N 0 -3.456 1.367 -0.114
14 N03 N N2 N Y N 0 -2.363 0.633 -0.216
15 C04 C C13 N Y N 0 -2.438 -0.7 -0.25
16 N05 N N3 N N N 0 -1.279 -1.441 -0.352
17 C06 C C14 N N N 0 0.018 -0.765 -0.432
18 C07 C C15 N N N 0 1.132 -1.809 -0.537
19 C09 C C16 N N N 0 3.502 -2.08 -0.957
20 F18 F F1 N N N 0 10.01 1.94 -0.15
21 F21 F F2 N N N 0 7.172 -1.249 1.902
22 N22 N N4 N Y N 0 -3.603 -1.323 -0.178
23 N24 N N5 N Y N 0 -6.014 -0.956 0.006
24 N26 N N6 N Y N 0 -5.99 1.212 0.058
25 N27 N N7 N Y N 0 -4.672 0.751 -0.043
26 C28 C C17 N Y N 0 -8.243 0.169 0.19
27 C29 C C18 N Y N 0 -9.056 -0.92 0.221
28 C30 C C19 N Y N 0 -10.376 -0.438 0.323
29 C31 C C20 N Y N 0 -10.304 0.908 0.348
30 O32 O O1 N Y N 0 -9.013 1.27 0.273
31 N1 N N8 N N N 0 5.127 -0.618 0.145
32 N2 N N9 N N N 0 2.433 -1.13 -0.617
33 H1 H H1 N N N 0 5.623 -2.029 -1.331
34 H2 H H2 N N N 0 4.738 -0.601 -1.921
35 H3 H H3 N N N 0 2.822 -1.147 1.448
36 H4 H H4 N N N 0 1.937 0.281 0.859
37 H5 H H5 N N N 0 5.799 1.26 -1.591
38 H6 H H6 N N N 0 9.392 0.081 1.575
39 H7 H H7 N N N 0 7.976 2.401 -1.716
40 H8 H H8 N N N 0 3.964 1.072 -0.31
41 H9 H H9 N N N 0 4.3 0.832 1.421
42 H10 H H10 N N N 0 -4.176 3.269 -0.004
43 H11 H H11 N N N 0 -2.504 3.167 -0.13
44 H12 H H12 N N N 0 -1.323 -2.41 -0.371
45 H13 H H13 N N N 0 0.039 -0.121 -1.311
46 H14 H H14 N N N 0 0.169 -0.162 0.464
47 H15 H H15 N N N 0 1.111 -2.452 0.342
48 H16 H H16 N N N 0 0.981 -2.412 -1.433
49 H17 H H17 N N N 0 3.26 -2.58 -1.894
50 H18 H H18 N N N 0 3.596 -2.821 -0.162
51 H19 H H19 N N N 0 -8.75 -1.955 0.177
52 H20 H H20 N N N 0 -11.276 -1.033 0.371
53 H21 H H21 N N N 0 -11.144 1.582 0.42