Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6MS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C12 C C1 N N N 0 1.272 1.111 -1.149
2 P18 P P1 N N N 0 -6.225 -0.29 0.147
3 O01 O O1 N N N 0 6.716 0.388 1.088
4 C02 C C2 N N N 0 5.703 -0.071 0.589
5 N03 N N1 N N N 0 5.588 -1.396 0.352
6 C04 C C3 N N N 0 4.451 -1.899 -0.207
7 N05 N N2 N N N 0 4.362 -3.25 -0.436
8 N06 N N3 N N N 0 3.437 -1.129 -0.532
9 C07 C C4 N Y N 0 3.479 0.193 -0.327
10 C08 C C5 N Y N 0 4.618 0.769 0.248
11 N09 N N4 N Y N 0 4.391 2.103 0.339
12 C10 C C6 N Y N 0 3.211 2.372 -0.136
13 N11 N N5 N Y N 0 2.607 1.222 -0.555
14 C13 C C7 N N N 0 0.256 0.768 -0.058
15 C14 C C8 N N N 0 -1.138 0.651 -0.677
16 C15 C C9 N N N 0 -2.154 0.308 0.414
17 C16 C C10 N N N 0 -3.548 0.192 -0.206
18 C17 C C11 N N N 0 -4.564 -0.152 0.885
19 O19 O O2 N N N 0 -6.681 1.145 -0.422
20 O20 O O3 N N N 0 -6.193 -1.272 -0.96
21 O21 O O4 N N N 0 -7.272 -0.779 1.268
22 H1 H H1 N N N 0 1.0 2.06 -1.612
23 H2 H H2 N N N 0 1.274 0.325 -1.904
24 H3 H H3 N N N 0 5.101 -3.831 -0.2
25 H4 H H4 N N N 0 3.559 -3.622 -0.833
26 H6 H H6 N N N 0 2.772 3.358 -0.186
27 H7 H H7 N N N 0 0.527 -0.181 0.406
28 H8 H H8 N N N 0 0.254 1.554 0.697
29 H9 H H9 N N N 0 -1.41 1.6 -1.141
30 H10 H H10 N N N 0 -1.136 -0.135 -1.432
31 H11 H H11 N N N 0 -1.883 -0.64 0.878
32 H12 H H12 N N N 0 -2.157 1.094 1.169
33 H13 H H13 N N N 0 -3.82 1.14 -0.669
34 H14 H H14 N N N 0 -3.546 -0.594 -0.961
35 H15 H H15 N N N 0 -4.567 0.634 1.64
36 H16 H H16 N N N 0 -4.293 -1.1 1.349
37 H17 H H17 N N N 0 -6.724 1.839 0.25
38 H18 H H18 N N N 0 -8.178 -0.875 0.945
39 H5 H H5 N N N 0 6.318 -1.993 0.581