Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6ZD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 R N N 0 4.852 -1.503 -1.065
2 C17 C C2 N Y N 0 6.144 1.893 1.411
3 C20 C C3 N N N 0 7.863 2.535 -0.614
4 C28 C C4 N N N 0 -5.451 -0.116 0.259
5 O01 O O1 N N N 0 -4.386 -2.874 0.527
6 S02 S S1 N N N 0 -3.751 -1.91 1.357
7 C03 C C5 N N N 0 -2.334 -1.168 0.501
8 P04 P P1 N N N 0 -1.023 -2.419 0.3
9 O05 O O2 N N N 0 0.235 -1.76 -0.459
10 C06 C C6 N N N 0 1.465 -2.455 -0.675
11 C07 C C7 R N N 0 2.441 -1.544 -1.421
12 C08 C C8 S N N 0 3.731 -2.319 -1.753
13 O09 O O3 N N N 0 3.939 -2.362 -3.167
14 O11 O O4 N N N 0 6.007 -1.416 -1.902
15 C12 C C9 R N N 0 4.185 -0.115 -0.895
16 N13 N N1 N Y N 0 4.805 0.624 0.208
17 C14 C C10 N Y N 0 4.359 0.671 1.497
18 N15 N N2 N Y N 0 5.152 1.424 2.204
19 C16 C C11 N Y N 0 5.928 1.389 0.134
20 C18 C C12 N N N 0 7.305 2.763 1.623
21 N19 N N3 N N N 0 8.104 3.033 0.58
22 N21 N N4 N N N 0 8.713 2.846 -1.641
23 N22 N N5 N N N 0 6.803 1.724 -0.867
24 O23 O O5 N N N 0 7.539 3.232 2.726
25 O24 O O6 N N N 0 2.812 -0.436 -0.585
26 O25 O O7 N N N 0 -0.596 -2.905 1.631
27 O26 O O8 N N N 0 -1.587 -3.653 -0.567
28 N27 N N6 N N N 0 -4.854 -0.68 1.472
29 C29 C C13 N N N 0 -6.679 0.716 0.634
30 N30 N N7 N N N 0 -7.276 1.28 -0.579
31 C31 C C14 N N N 0 -8.377 2.054 -0.491
32 C32 C C15 N N N 0 -8.991 2.634 -1.739
33 O34 O O9 N N N 0 -8.873 2.282 0.592
34 O35 O O10 N N N 0 -3.418 -2.21 2.705
35 H1 H H1 N N N 0 5.108 -1.933 -0.097
36 H2 H H2 N N N 0 -4.722 0.52 -0.243
37 H3 H H3 N N N 0 -5.749 -0.924 -0.409
38 H4 H H4 N N N 0 -2.648 -0.81 -0.479
39 H5 H H5 N N N 0 -1.952 -0.333 1.088
40 H6 H H6 N N N 0 1.895 -2.74 0.286
41 H7 H H7 N N N 0 1.277 -3.351 -1.268
42 H8 H H8 N N N 0 1.98 -1.179 -2.338
43 H9 H H9 N N N 0 3.687 -3.328 -1.343
44 H10 H H10 N N N 0 4.767 -2.787 -3.43
45 H11 H H11 N N N 0 6.407 -2.271 -2.111
46 H12 H H12 N N N 0 4.246 0.456 -1.822
47 H13 H H13 N N N 0 3.484 0.163 1.872
48 H14 H H14 N N N 0 9.476 3.424 -1.481
49 H15 H H15 N N N 0 8.553 2.489 -2.529
50 H16 H H16 N N N 0 6.664 1.379 -1.763
51 H17 H H17 N N N 0 -1.885 -3.407 -1.453
52 H18 H H18 N N N 0 -5.105 -0.334 2.342
53 H22 H H22 N N N 0 -8.261 3.27 -2.241
54 H19 H H19 N N N 0 -7.409 0.08 1.136
55 H20 H H20 N N N 0 -6.381 1.523 1.302
56 H21 H H21 N N N 0 -6.879 1.097 -1.445
57 H23 H H23 N N N 0 -9.289 1.827 -2.407
58 CL1 CL CL1 N N Y 0 -10.438 3.614 -1.296