Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 7J8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 106


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O15 O O1 N N N 0 -4.568 -3.326 -2.458
2 C39 C C1 N N N 0 -4.097 -2.248 -2.733
3 O14 O O2 N N N 0 -3.128 -2.155 -3.657
4 C38 C C2 N N N 0 -4.602 -1.007 -2.043
5 C37 C C3 N N N 0 -5.701 -1.388 -1.049
6 C5 C C4 N Y N 0 -6.206 -0.147 -0.359
7 C2 C C5 N Y N 0 -7.267 0.674 -0.79
8 C3 C C6 N N N 0 -8.105 0.472 -2.026
9 C4 C C7 N N N 0 -9.299 -0.384 -1.689
10 O1 O O3 N N N 0 -9.453 -0.789 -0.561
11 O O O4 N N N 0 -10.191 -0.697 -2.642
12 C6 C C8 N Y N 0 -5.728 0.379 0.787
13 N3 N N1 N Y N 0 -6.453 1.497 1.077
14 C1 C C9 N Y N 0 -7.394 1.673 0.107
15 C C C10 N N N 0 -8.404 2.79 0.047
16 C7 C C11 N N N 0 -4.591 -0.174 1.607
17 C8 C C12 N Y N 0 -3.283 0.334 1.058
18 N2 N N2 N Y N 0 -2.487 -0.315 0.161
19 C13 C C13 N Y N 0 -1.393 0.459 -0.093
20 C12 C C14 N Y N 0 -1.497 1.588 0.636
21 C34 C C15 N N N 0 -0.509 2.726 0.663
22 C35 C C16 N N N 0 -0.878 3.748 -0.414
23 C36 C C17 N N N 0 0.109 4.886 -0.387
24 C10 C C19 N N N 0 -3.237 2.552 2.312
25 O13 O O5 N N N 0 1.015 4.88 0.412
26 O12 O O6 N N N 0 -0.018 5.905 -1.251
27 C9 C C18 N Y N 0 -2.701 1.511 1.364
28 C11 C C20 N N N 0 -2.723 2.278 3.702
29 O3 O O7 N N N 0 -1.996 1.334 3.902
30 O2 O O8 N N N 0 -3.074 3.082 4.718
31 C14 C C21 N N N 0 -0.263 0.111 -1.028
32 C19 C C24 N Y N 0 2.154 -1.992 0.804
33 C15 C C22 N Y N 0 0.859 -0.522 -0.246
34 N1 N N3 N Y N 0 1.946 0.126 0.26
35 C20 C C23 N Y N 0 2.736 -0.78 0.903
36 C31 C C25 N N N 0 2.682 -3.284 1.372
37 C32 C C26 N N N 0 2.144 -3.476 2.791
38 C33 C C27 N N N 0 2.672 -4.768 3.358
39 O11 O O9 N N N 0 3.404 -5.465 2.695
40 O10 O O10 N N N 0 2.329 -5.146 4.6
41 C16 C C28 N Y N 0 0.957 -1.828 0.078
42 C17 C C29 N N N 0 -0.029 -2.911 -0.274
43 C18 C C30 N N N 0 0.347 -3.521 -1.6
44 O5 O O11 N N N 0 1.315 -3.116 -2.198
45 O4 O O12 N N N 0 -0.396 -4.513 -2.117
46 C21 C C31 N N N 0 4.037 -0.479 1.602
47 C22 C C32 N Y N 0 5.185 -0.738 0.661
48 N N N4 N Y N 0 5.905 -1.893 0.577
49 C27 C C33 N Y N 0 6.856 -1.747 -0.388
50 C26 C C34 N Y N 0 6.74 -0.51 -0.911
51 C28 C C35 N N N 0 7.59 0.078 -2.007
52 C29 C C36 N N N 0 8.732 0.887 -1.389
53 C30 C C37 N N N 0 9.582 1.476 -2.485
54 O9 O O13 N N N 0 9.303 1.269 -3.643
55 O8 O O14 N N N 0 10.649 2.229 -2.176
56 C23 C C38 N Y N 0 5.674 0.13 -0.248
57 C24 C C39 N N N 0 5.174 1.528 -0.505
58 C25 C C40 N N N 0 5.916 2.497 0.379
59 O7 O O15 N N N 0 6.764 2.093 1.139
60 O6 O O16 N N N 0 5.636 3.808 0.321
61 H45 H H1 N N N 0 -2.84 -2.978 -4.076
62 H43 H H2 N N N 0 -3.78 -0.528 -1.511
63 H44 H H3 N N N 0 -5.005 -0.318 -2.785
64 H42 H H4 N N N 0 -6.522 -1.867 -1.582
65 H41 H H5 N N N 0 -5.297 -2.077 -0.308
66 H8 H H6 N N N 0 -8.445 1.439 -2.396
67 H7 H H7 N N N 0 -7.509 -0.022 -2.793
68 H9 H H8 N N N 0 -10.94 -1.248 -2.378
69 H3 H H9 N N N 0 -6.322 2.072 1.848
70 H6 H H10 N N N 0 -7.984 3.63 -0.507
71 H5 H H11 N N N 0 -9.306 2.439 -0.454
72 H4 H H12 N N N 0 -8.651 3.111 1.059
73 H11 H H13 N N N 0 -4.7 0.148 2.643
74 H10 H H14 N N N 0 -4.606 -1.263 1.561
75 H2 H H15 N N N 0 -2.668 -1.184 -0.23
76 H36 H H16 N N N 0 -0.534 3.205 1.642
77 H37 H H17 N N N 0 0.493 2.342 0.471
78 H38 H H18 N N N 0 -0.854 3.269 -1.393
79 H39 H H19 N N N 0 -1.88 4.132 -0.223
80 H40 H H20 N N N 0 0.639 6.612 -1.195
81 H12 H H21 N N N 0 -2.908 3.54 1.992
82 H13 H H22 N N N 0 -4.327 2.515 2.314
83 H14 H H23 N N N 0 -2.719 2.866 5.591
84 H16 H H24 N N N 0 -0.619 -0.589 -1.784
85 H15 H H25 N N N 0 0.099 1.017 -1.513
86 H1 H H26 N N N 0 2.127 1.075 0.176
87 H31 H H27 N N N 0 2.359 -4.115 0.745
88 H33 H H30 N N N 0 1.055 -3.509 2.765
89 H32 H H28 N N N 0 3.771 -3.251 1.398
90 H34 H H29 N N N 0 2.467 -2.645 3.417
91 H35 H H31 N N N 0 2.693 -5.983 4.92
92 H18 H H32 N N N 0 -0.013 -3.682 0.498
93 H17 H H33 N N N 0 -1.029 -2.484 -0.34
94 H19 H H34 N N N 0 -0.116 -4.872 -2.97
95 H21 H H35 N N N 0 4.049 0.566 1.911
96 H27 H H39 N N N 0 8.003 -0.725 -2.618
97 H20 H H36 N N N 0 4.134 -1.118 2.479
98 H H H37 N N N 0 5.763 -2.688 1.116
99 H25 H H38 N N N 0 7.579 -2.494 -0.682
100 H26 H H40 N N N 0 6.978 0.731 -2.631
101 H29 H H41 N N N 0 8.319 1.691 -0.779
102 H28 H H42 N N N 0 9.344 0.235 -0.766
103 H30 H H43 N N N 0 11.164 2.585 -2.914
104 H23 H H44 N N N 0 5.342 1.787 -1.55
105 H22 H H45 N N N 0 4.108 1.579 -0.285
106 H24 H H46 N N N 0 6.138 4.391 0.907