Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 7LD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 5.157 0.314 0.448
2 N3 N N2 N N N 0 -3.879 0.503 0.291
3 C4 C C1 N Y N 0 4.058 2.564 -0.124
4 C5 C C2 N Y N 0 2.791 3.064 -0.401
5 C6 C C3 N Y N 0 1.704 0.942 -0.174
6 C7 C C4 N Y N 0 3.316 -0.941 0.435
7 C8 C C5 N Y N 0 4.632 -0.957 0.618
8 C10 C C6 N N N 0 -0.607 0.287 0.043
9 C13 C C7 N N N 0 -1.324 -1.921 -0.782
10 C15 C C8 N N N 0 2.217 -1.97 0.493
11 C17 C C9 N N N 0 -3.602 0.63 1.724
12 C20 C C10 N N N 0 -4.952 2.472 -0.686
13 N2 N N3 N N N 0 -0.063 -2.449 -0.252
14 C12 C C11 N N N 0 0.26 -3.748 -0.858
15 C11 C C12 R N N 0 1.048 -1.516 -0.393
16 C3 C C13 N Y N 0 2.993 0.445 0.116
17 C1 C C14 N Y N 0 4.168 1.2 0.143
18 C2 C C15 N Y N 0 1.632 2.292 -0.431
19 C9 C C16 N N N 0 0.644 -0.084 -0.164
20 C14 C C17 R N N 0 -1.735 -0.71 0.062
21 C16 C C18 N N N 0 -2.976 -0.083 -0.52
22 O1 O O1 N N N 0 -3.161 -0.105 -1.718
23 C19 C C19 N N N 0 -5.136 1.013 -0.261
24 C18 C C20 N N N 0 -4.217 -0.557 2.469
25 H1 H H1 N N N 0 6.095 0.542 0.538
26 H2 H H2 N N N 0 4.925 3.208 -0.117
27 H3 H H3 N N N 0 2.7 4.121 -0.606
28 H4 H H4 N N N 0 5.21 -1.836 0.864
29 H5 H H5 N N N 0 -0.826 1.332 0.204
30 H6 H H6 N N N 0 -1.186 -1.615 -1.819
31 H7 H H7 N N N 0 -2.098 -2.687 -0.726
32 H8 H H8 N N N 0 2.596 -2.927 0.133
33 H9 H H9 N N N 0 1.873 -2.078 1.521
34 H10 H H10 N N N 0 -2.525 0.643 1.887
35 H11 H H11 N N N 0 -4.037 1.557 2.097
36 H12 H H12 N N N 0 -5.888 2.851 -1.096
37 H13 H H13 N N N 0 -4.666 3.069 0.18
38 H14 H H14 N N N 0 -4.172 2.533 -1.444
39 H16 H H16 N N N 0 1.136 -4.171 -0.366
40 H17 H H17 N N N 0 -0.586 -4.424 -0.739
41 H18 H H18 N N N 0 0.47 -3.612 -1.919
42 H22 H H22 N N N 0 -5.422 0.416 -1.126
43 H19 H H19 N N N 0 1.389 -1.582 -1.426
44 H20 H H20 N N N 0 0.68 2.751 -0.655
45 H21 H H21 N N N 0 -1.929 -1.025 1.087
46 H23 H H23 N N N 0 -5.917 0.952 0.498
47 H24 H H24 N N N 0 -5.294 -0.57 2.306
48 H25 H H25 N N N 0 -3.782 -1.485 2.096
49 H26 H H26 N N N 0 -4.011 -0.463 3.535