Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 7NO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -5.774 3.466 -0.679
2 N3 N N2 N Y N 0 -3.554 2.842 -0.838
3 C4 C C1 N Y N 0 -3.832 1.599 -0.457
4 C5 C C2 N Y N 0 -5.163 1.256 -0.166
5 C6 C C3 N Y N 0 -6.147 2.251 -0.292
6 C8 C C4 N Y N 0 -3.956 -0.52 0.14
7 P P P1 N N N 0 0.368 -5.126 -0.083
8 OP1 O O1 N N N 0 1.727 -5.331 0.467
9 OP2 O O2 N N N 0 -0.727 -5.546 1.021
10 O5' O O3 N N N 0 0.173 -3.576 -0.469
11 C5' C C5 N N N 0 0.382 -2.51 0.46
12 C4' C C6 R N N 0 0.112 -1.171 -0.23
13 C3' C C7 S N N 0 0.437 -0.012 0.732
14 O3' O O4 N N N 0 1.475 0.836 0.173
15 C2' C C8 R N N 0 -0.895 0.769 0.848
16 O2' O O5 N N N 0 -0.662 2.179 0.836
17 C1' C C9 R N N 0 -1.647 0.322 -0.432
18 O4' O O6 N N N 0 -1.281 -1.068 -0.568
19 N9 N N3 N Y N 0 -3.094 0.46 -0.255
20 N7 N N4 N Y N 0 -5.169 -0.051 0.192
21 C2 C C10 N Y N 0 -4.509 3.741 -0.941
22 N6 N N5 N N N 0 -7.475 1.972 -0.019
23 N N N6 N N N 0 3.686 3.395 1.577
24 CA C C11 S N N 0 3.332 2.422 0.535
25 CE C C14 N N N 0 8.223 2.693 -1.581
26 CB C C12 N N N 0 4.561 1.58 0.185
27 CG C C13 N N N 0 5.63 2.475 -0.444
28 SD S S1 N N N 0 7.087 1.477 -0.859
29 C C C15 N N N 0 2.234 1.522 1.041
30 O O O7 N N N 0 2.037 1.418 2.229
31 O1 O O8 N N Y 0 0.179 -6.035 -1.398
32 H1 H H1 N N N 0 -3.673 -1.535 0.376
33 H2 H H2 N N N 0 -1.642 -5.437 0.729
34 H3 H H3 N N N 0 -0.298 -2.627 1.305
35 H4 H H4 N N N 0 1.411 -2.534 0.816
36 H5 H H5 N N N 0 0.719 -1.09 -1.131
37 H6 H H6 N N N 0 0.739 -0.396 1.705
38 H7 H H7 N N N 0 -1.442 0.474 1.743
39 H8 H H8 N N N 0 -1.467 2.711 0.906
40 H9 H H9 N N N 0 -1.308 0.894 -1.296
41 H13 H H13 N N N 0 2.909 4.006 1.78
42 H10 H H10 N N N 0 -4.249 4.742 -1.253
43 H11 H H11 N N N 0 -8.145 2.667 -0.109
44 H12 H H12 N N N 0 -7.735 1.081 0.263
45 H18 H H18 N N N 0 4.278 0.8 -0.521
46 H14 H H14 N N N 0 4.009 2.93 2.412
47 H16 H H16 N N N 0 2.988 2.95 -0.354
48 H17 H H17 N N N 0 4.958 1.122 1.092
49 H19 H H19 N N N 0 5.233 2.933 -1.35
50 H20 H H20 N N N 0 5.913 3.255 0.263
51 H21 H H21 N N N 0 7.761 3.145 -2.459
52 H22 H H22 N N N 0 8.441 3.467 -0.846
53 H23 H H23 N N N 0 9.149 2.197 -1.872
54 H24 H H24 N N N 0 0.282 -6.983 -1.24