Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 847

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 5.998 -0.643 0.041
2 C2 C C2 N Y N 0 6.064 0.536 -0.712
3 C3 C C3 N Y N 0 4.924 1.213 -1.038
4 C4 C C4 N Y N 0 3.686 0.738 -0.624
5 C5 C C5 N Y N 0 3.601 -0.446 0.134
6 C6 C C6 N Y N 0 4.768 -1.138 0.46
7 C7 C C7 N N N 0 7.24 -1.367 0.387
8 N1 N N1 N N N 0 7.18 -2.488 1.103
9 N2 N N2 N N N 1 8.419 -0.897 -0.018
10 N3 N N3 N Y N 0 2.391 1.182 -0.788
11 N4 N N4 N Y N 0 2.287 -0.664 0.391
12 C8 C C8 N Y N 0 1.57 0.291 -0.149
13 C1' C C1' N Y N 0 0.098 0.392 -0.079
14 C2' C C2' N Y N 0 -0.69 -0.755 -0.197
15 C3' C C3' N Y N 0 -2.063 -0.655 -0.131
16 CVX C C31' R N N 0 -2.912 -1.894 -0.258
17 CWX C C32' N N N 0 -3.829 -1.754 -1.446
18 OXX O O33' N N N 0 -3.765 -2.557 -2.363
19 OYX O O34' N N N -1 -4.634 -0.839 -1.491
20 C6X C C42' N N N 0 -3.747 -2.073 1.012
21 C7X C C43' N N N 0 -4.503 -3.375 0.936
22 O8X O O44' N N N 0 -4.379 -4.125 -0.087
23 O9X O O45' N N N -1 -5.266 -3.726 1.896
24 C4' C C4' N Y N 0 -2.666 0.578 0.052
25 C5' C C5' N Y N 0 -1.897 1.72 0.17
26 C6' C C6' N Y N 0 -0.514 1.636 0.111
27 O6' O O6' N N N -1 0.242 2.758 0.227
28 BR5' BR BR5' N N N 0 -2.732 3.399 0.42
29 HC2 H HC2 N N N 0 7.023 0.912 -1.037
30 HC3 H HC3 N N N 0 4.986 2.122 -1.619
31 HC6 H HC6 N N N 0 4.716 -2.05 1.037
32 HH11 H HH11 N N N 0 7.995 -2.963 1.33
33 HH12 H HH12 N N N 0 6.321 -2.83 1.398
34 HH21 H HH21 N N N 0 8.463 -0.081 -0.54
35 HH22 H HH22 N N N 0 9.234 -1.37 0.212
36 HN3 H HN3 N N N 0 2.113 1.978 -1.268
37 HC2' H HC2' N N N 0 -0.224 -1.718 -0.34
38 H31B H H31B N N N 0 -2.269 -2.763 -0.396
39 H42A H H42A N N N 0 -3.089 -2.085 1.88
40 H42B H H42B N N N 0 -4.453 -1.248 1.102
41 HC4' H HC4' N N N 0 -3.743 0.647 0.103