Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8B9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 29


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 0.069 1.036 0.107
2 C2 C C2 R N N 0 -0.701 -0.25 -0.207
3 C3 C C3 S N N 0 0.055 -1.444 0.384
4 C4 C C4 N N N 0 1.478 -1.465 -0.182
5 C5 C C5 S N N 0 2.163 -0.132 0.13
6 C6 C C6 N N N 0 3.564 -0.122 -0.484
7 C7 C C7 N N N 0 -3.039 0.432 -0.288
8 C8 C C8 N N N 0 -4.416 0.508 0.319
9 O3 O O3 N N N 0 -0.617 -2.655 0.034
10 O6 O O6 N N N 0 4.246 1.073 -0.097
11 O7 O O7 N N N 0 -2.829 0.916 -1.38
12 N2 N N2 N N N 0 -2.039 -0.175 0.383
13 O5 O O N N N 0 1.393 0.938 -0.421
14 O1 O O1 N N Y 0 0.132 1.221 1.522
15 H1 H H1 N N N 0 -0.442 1.885 -0.348
16 H2 H H2 N N N 0 -0.784 -0.37 -1.287
17 H3 H H3 N N N 0 0.094 -1.349 1.47
18 H4 H H4 N N N 0 2.04 -2.279 0.275
19 H5A H H5 N N N 0 1.438 -1.611 -1.262
20 H5 H H6 N N N 0 2.239 -0.006 1.21
21 H61 H H7 N N N 0 4.122 -0.989 -0.131
22 H62 H H8 N N N 0 3.484 -0.159 -1.571
23 H81 H H9 N N N 0 -4.993 -0.367 0.021
24 H82 H H10 N N N 0 -4.333 0.537 1.405
25 H83 H H11 N N N 0 -4.918 1.41 -0.032
26 HO3 H H12 N N Y 0 -0.192 -3.454 0.376
27 HO6 H H13 N N Y 0 5.142 1.147 -0.451
28 HN2 H H14 N N N 0 -2.207 -0.563 1.256
29 HO1 H H15 N N N 0 0.606 2.019 1.794