Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8BU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P P1 N N N 0 -7.129 -1.308 0.646
2 O1G O O1 N N N 0 -7.96 -0.176 0.18
3 O2G O O2 N N N 0 -7.615 -1.763 2.112
4 O3G O O3 N N N 0 -7.28 -2.542 -0.377
5 PB P P2 N N N 0 -4.649 0.057 -0.234
6 O1B O O4 N N N 0 -5.216 1.421 -0.33
7 O2B O O5 N N N 0 -4.574 -0.597 -1.704
8 O3B O O6 N N N 0 -5.586 -0.85 0.71
9 PA P P3 N N N 0 -1.911 1.171 -0.591
10 O1A O O7 N N N 0 -2.478 2.534 -0.687
11 O2A O O8 N N N 0 -1.837 0.516 -2.061
12 N9 N N1 N Y N 0 4.608 -0.394 -0.043
13 C8 C C1 N Y N 0 4.265 -1.15 -1.125
14 N7 N N2 N Y N 0 5.198 -2.024 -1.369
15 C5 C C2 N Y N 0 6.196 -1.885 -0.464
16 C6 C C3 N Y N 0 7.423 -2.531 -0.238
17 N6 N N3 N N N 0 7.837 -3.569 -1.054
18 N1 N N4 N Y N 0 8.177 -2.121 0.777
19 C2 C C4 N Y N 0 7.79 -1.131 1.56
20 N3 N N5 N Y N 0 6.649 -0.497 1.387
21 C4 C C5 N Y N 0 5.829 -0.837 0.398
22 C01 C C6 S N N 0 -2.973 0.144 0.477
23 O5' O O9 N N N 0 -0.431 1.248 0.037
24 C5' C C7 N N N 0 0.606 2.063 -0.512
25 C4' C C8 R N N 0 1.878 1.902 0.324
26 C3' C C9 S N N 0 2.975 2.867 -0.176
27 O3' O O10 N N N 0 3.021 4.039 0.641
28 C2' C C10 R N N 0 4.283 2.056 -0.032
29 O2' O O11 N N N 0 5.175 2.702 0.878
30 C1' C C11 R N N 0 3.82 0.696 0.537
31 H6 H H6 N N N 0 -1.474 -0.38 -2.074
32 O4' O O12 N N N 0 2.436 0.582 0.141
33 F01 F F1 N N N 0 -2.437 -1.145 0.567
34 H1 H H1 N N N 0 -8.536 -2.052 2.148
35 H2 H H2 N N N 0 -6.761 -3.32 -0.133
36 H4 H H4 N N N 0 -4.212 -1.493 -1.717
37 H7 H H7 N N N 0 3.354 -1.04 -1.694
38 H10 H H10 N N N 0 8.433 -0.831 2.374
39 H8 H H8 N N N 0 7.278 -3.859 -1.792
40 H9 H H9 N N N 0 8.686 -4.007 -0.888
41 H11 H H11 N N N 0 -3.023 0.587 1.472
42 H12 H H12 N N N 0 0.805 1.755 -1.539
43 H13 H H13 N N N 0 0.293 3.107 -0.5
44 H14 H H14 N N N 0 1.664 2.082 1.377
45 H15 H H15 N N N 0 2.803 3.136 -1.218
46 H16 H H16 N N N 0 3.693 4.68 0.372
47 H17 H H17 N N N 0 4.759 1.924 -1.004
48 H18 H H18 N N N 0 5.45 3.586 0.598
49 H19 H H19 N N N 0 3.907 0.69 1.623