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PDBeChem : Atoms of Molecule
Molecule : 8BU
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 49
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
PG |
P |
P1 |
N |
N |
N |
0 |
-7.129 |
-1.308 |
0.646 |
2 |
O1G |
O |
O1 |
N |
N |
N |
0 |
-7.96 |
-0.176 |
0.18 |
3 |
O2G |
O |
O2 |
N |
N |
N |
0 |
-7.615 |
-1.763 |
2.112 |
4 |
O3G |
O |
O3 |
N |
N |
N |
0 |
-7.28 |
-2.542 |
-0.377 |
5 |
PB |
P |
P2 |
N |
N |
N |
0 |
-4.649 |
0.057 |
-0.234 |
6 |
O1B |
O |
O4 |
N |
N |
N |
0 |
-5.216 |
1.421 |
-0.33 |
7 |
O2B |
O |
O5 |
N |
N |
N |
0 |
-4.574 |
-0.597 |
-1.704 |
8 |
O3B |
O |
O6 |
N |
N |
N |
0 |
-5.586 |
-0.85 |
0.71 |
9 |
PA |
P |
P3 |
N |
N |
N |
0 |
-1.911 |
1.171 |
-0.591 |
10 |
O1A |
O |
O7 |
N |
N |
N |
0 |
-2.478 |
2.534 |
-0.687 |
11 |
O2A |
O |
O8 |
N |
N |
N |
0 |
-1.837 |
0.516 |
-2.061 |
12 |
N9 |
N |
N1 |
N |
Y |
N |
0 |
4.608 |
-0.394 |
-0.043 |
13 |
C8 |
C |
C1 |
N |
Y |
N |
0 |
4.265 |
-1.15 |
-1.125 |
14 |
N7 |
N |
N2 |
N |
Y |
N |
0 |
5.198 |
-2.024 |
-1.369 |
15 |
C5 |
C |
C2 |
N |
Y |
N |
0 |
6.196 |
-1.885 |
-0.464 |
16 |
C6 |
C |
C3 |
N |
Y |
N |
0 |
7.423 |
-2.531 |
-0.238 |
17 |
N6 |
N |
N3 |
N |
N |
N |
0 |
7.837 |
-3.569 |
-1.054 |
18 |
N1 |
N |
N4 |
N |
Y |
N |
0 |
8.177 |
-2.121 |
0.777 |
19 |
C2 |
C |
C4 |
N |
Y |
N |
0 |
7.79 |
-1.131 |
1.56 |
20 |
N3 |
N |
N5 |
N |
Y |
N |
0 |
6.649 |
-0.497 |
1.387 |
21 |
C4 |
C |
C5 |
N |
Y |
N |
0 |
5.829 |
-0.837 |
0.398 |
22 |
C01 |
C |
C6 |
S |
N |
N |
0 |
-2.973 |
0.144 |
0.477 |
23 |
O5' |
O |
O9 |
N |
N |
N |
0 |
-0.431 |
1.248 |
0.037 |
24 |
C5' |
C |
C7 |
N |
N |
N |
0 |
0.606 |
2.063 |
-0.512 |
25 |
C4' |
C |
C8 |
R |
N |
N |
0 |
1.878 |
1.902 |
0.324 |
26 |
C3' |
C |
C9 |
S |
N |
N |
0 |
2.975 |
2.867 |
-0.176 |
27 |
O3' |
O |
O10 |
N |
N |
N |
0 |
3.021 |
4.039 |
0.641 |
28 |
C2' |
C |
C10 |
R |
N |
N |
0 |
4.283 |
2.056 |
-0.032 |
29 |
O2' |
O |
O11 |
N |
N |
N |
0 |
5.175 |
2.702 |
0.878 |
30 |
C1' |
C |
C11 |
R |
N |
N |
0 |
3.82 |
0.696 |
0.537 |
31 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-1.474 |
-0.38 |
-2.074 |
32 |
O4' |
O |
O12 |
N |
N |
N |
0 |
2.436 |
0.582 |
0.141 |
33 |
F01 |
F |
F1 |
N |
N |
N |
0 |
-2.437 |
-1.145 |
0.567 |
34 |
H1 |
H |
H1 |
N |
N |
N |
0 |
-8.536 |
-2.052 |
2.148 |
35 |
H2 |
H |
H2 |
N |
N |
N |
0 |
-6.761 |
-3.32 |
-0.133 |
36 |
H4 |
H |
H4 |
N |
N |
N |
0 |
-4.212 |
-1.493 |
-1.717 |
37 |
H7 |
H |
H7 |
N |
N |
N |
0 |
3.354 |
-1.04 |
-1.694 |
38 |
H10 |
H |
H10 |
N |
N |
N |
0 |
8.433 |
-0.831 |
2.374 |
39 |
H8 |
H |
H8 |
N |
N |
N |
0 |
7.278 |
-3.859 |
-1.792 |
40 |
H9 |
H |
H9 |
N |
N |
N |
0 |
8.686 |
-4.007 |
-0.888 |
41 |
H11 |
H |
H11 |
N |
N |
N |
0 |
-3.023 |
0.587 |
1.472 |
42 |
H12 |
H |
H12 |
N |
N |
N |
0 |
0.805 |
1.755 |
-1.539 |
43 |
H13 |
H |
H13 |
N |
N |
N |
0 |
0.293 |
3.107 |
-0.5 |
44 |
H14 |
H |
H14 |
N |
N |
N |
0 |
1.664 |
2.082 |
1.377 |
45 |
H15 |
H |
H15 |
N |
N |
N |
0 |
2.803 |
3.136 |
-1.218 |
46 |
H16 |
H |
H16 |
N |
N |
N |
0 |
3.693 |
4.68 |
0.372 |
47 |
H17 |
H |
H17 |
N |
N |
N |
0 |
4.759 |
1.924 |
-1.004 |
48 |
H18 |
H |
H18 |
N |
N |
N |
0 |
5.45 |
3.586 |
0.598 |
49 |
H19 |
H |
H19 |
N |
N |
N |
0 |
3.907 |
0.69 |
1.623 |
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