Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8BY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C7 C C1 N Y N 0 0.497 -1.296 0.016
2 C6 C C2 N Y N 0 0.598 0.101 -0.027
3 C9 C C3 N Y N 0 1.563 -3.49 0.09
4 C13 C C4 N Y N 0 -2.01 -1.132 0.019
5 C21 C C5 N Y N 0 2.929 -1.464 0.018
6 C8 C C6 N Y N 0 1.673 -2.088 0.041
7 C18 C C7 N Y N 0 -2.174 -0.076 0.918
8 C16 C C8 N Y N 0 -4.34 0.362 -0.012
9 C19 C C9 N N N 0 -5.545 1.136 -0.029
10 C1 C C10 N N N 0 0.062 2.987 1.144
11 C2 C C11 N N N 0 0.694 2.777 -0.233
12 C3 C C12 N N N 0 0.981 4.137 -0.874
13 O4 O O1 N N N 0 1.916 2.05 -0.092
14 C5 C C13 N Y N 0 1.826 0.697 -0.05
15 C10 C C14 N Y N 0 0.335 -4.078 0.113
16 C11 C C15 N Y N 0 -0.828 -3.317 0.083
17 C12 C C16 N Y N 0 -0.767 -1.935 0.04
18 C14 C C17 N Y N 0 -3.021 -1.436 -0.895
19 C15 C C18 N Y N 0 -4.176 -0.696 -0.911
20 C17 C C19 N Y N 0 -3.328 0.665 0.903
21 N20 N N1 N N N 0 -6.502 1.749 -0.042
22 C22 C C20 N Y N 0 3.003 -0.081 -0.031
23 C23 C C21 N N N 0 4.321 0.582 -0.055
24 O24 O O2 N N N 0 4.391 1.796 -0.097
25 N25 N N2 N N N 0 5.448 -0.157 -0.03
26 HC6 H H1 N N N 0 -0.296 0.707 -0.043
27 HC9 H H2 N N N 0 2.454 -4.1 0.114
28 HC21 H H3 N N N 0 3.831 -2.056 0.038
29 HC18 H H4 N N N 0 -1.391 0.158 1.624
30 HC1B H H5 N N N 0 -0.87 3.541 1.036
31 HC1A H H6 N N N 0 -0.142 2.018 1.601
32 HC1C H H7 N N N 0 0.749 3.549 1.777
33 HC2 H H8 N N N 0 0.008 2.215 -0.866
34 HC10 H H12 N N N 0 0.263 -5.155 0.155
35 HC3C H H9 N N N 0 1.667 4.699 -0.242
36 HC3B H H10 N N N 0 1.431 3.988 -1.856
37 HC3A H H11 N N N 0 0.049 4.691 -0.983
38 HC11 H H13 N N N 0 -1.789 -3.809 0.101
39 HC14 H H14 N N N 0 -2.894 -2.253 -1.589
40 HC15 H H15 N N N 0 -4.958 -0.93 -1.618
41 HC17 H H16 N N N 0 -3.455 1.481 1.599
42 H25B H H17 N N N 0 5.393 -1.125 0.004
43 H25A H H18 N N N 0 6.314 0.279 -0.046