Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8D7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C16 C C1 N Y N 0 1.4 -0.404 0.159
2 C10 C C2 N Y N 0 1.436 2.042 1.453
3 C8 C C3 N Y N 0 0.216 0.288 0.366
4 C7 C C4 N N N 0 -2.141 0.535 0.18
5 C6 C C5 N N N 0 -4.794 -3.682 0.445
6 C5 C C6 N N N 0 -4.683 -2.321 -0.247
7 O1 O O1 N N N 0 4.712 -0.507 1.533
8 C13 C C7 R N N 0 3.883 -0.624 0.375
9 C14 C C8 N N N 0 4.613 -0.036 -0.835
10 C15 C C9 N N N 0 5.854 -0.876 -1.139
11 N N N1 N N N 0 6.555 -0.312 -2.301
12 C12 C C10 N Y N 0 2.597 0.128 0.6
13 C11 C C11 N Y N 0 2.615 1.35 1.246
14 C9 C C12 N Y N 0 0.237 1.514 1.015
15 O O O2 N N N 0 -0.962 -0.233 -0.067
16 C3 C C13 N N N 0 -3.359 -0.206 -0.375
17 C4 C C14 N N N 0 -3.556 -1.512 0.399
18 C2 C C15 N N N 0 -4.603 0.67 -0.222
19 C1 C C16 N N N 0 -4.465 1.911 -1.107
20 C C C17 N N N 0 -5.761 2.722 -1.054
21 H1 H H1 N N N 0 1.386 -1.361 -0.342
22 H2 H H2 N N N 0 1.452 2.997 1.959
23 H3 H H3 N N N 0 -2.262 0.68 1.254
24 H4 H H4 N N N 0 -2.052 1.505 -0.309
25 H5 H H5 N N N 0 -5.597 -4.258 -0.015
26 H6 H H6 N N N 0 -3.853 -4.221 0.34
27 H7 H H7 N N N 0 -5.013 -3.535 1.502
28 H8 H H8 N N N 0 -4.464 -2.468 -1.305
29 H9 H H9 N N N 0 -5.624 -1.782 -0.142
30 H10 H H10 N N N 0 4.949 0.403 1.757
31 H11 H H11 N N N 0 3.662 -1.675 0.191
32 H12 H H12 N N N 0 3.948 -0.044 -1.699
33 H13 H H13 N N N 0 4.912 0.989 -0.616
34 H14 H H14 N N N 0 6.519 -0.868 -0.276
35 H15 H H15 N N N 0 5.555 -1.901 -1.358
36 H16 H H16 N N N 0 6.786 0.658 -2.148
37 H17 H H17 N N N 0 7.379 -0.85 -2.523
38 H19 H H19 N N N 0 3.551 1.764 1.59
39 H20 H H20 N N N 0 -0.683 2.055 1.178
40 H21 H H21 N N N 0 -3.199 -0.43 -1.429
41 H22 H H22 N N N 0 -3.818 -1.286 1.433
42 H23 H H23 N N N 0 -2.633 -2.091 0.376
43 H24 H H24 N N N 0 -5.485 0.105 -0.524
44 H25 H H25 N N N 0 -4.706 0.976 0.819
45 H26 H H26 N N N 0 -3.638 2.523 -0.747
46 H27 H H27 N N N 0 -4.269 1.604 -2.134
47 H28 H H28 N N N 0 -6.588 2.109 -1.414
48 H29 H H29 N N N 0 -5.956 3.028 -0.027
49 H30 H H30 N N N 0 -5.662 3.605 -1.684