Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8EX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 1.384 1.894 -0.201
2 C2 C C2 R N N 0 2.318 0.681 -0.216
3 C3 C C3 R N N 0 1.789 -0.349 -1.219
4 C4 C C4 R N N 0 0.354 -0.725 -0.838
5 C5 C C5 R N N 0 -0.505 0.542 -0.798
6 C6 C C6 N N N 0 -1.926 0.182 -0.36
7 C7 C C7 N N N 0 4.518 1.587 0.31
8 C8 C C8 N N N 0 5.902 2.022 -0.099
9 N2 N N N N N 0 3.663 1.104 -0.614
10 O1 O O1 N N Y 0 1.841 2.834 0.773
11 O3 O O3 N N N 0 2.613 -1.515 -1.188
12 O4 O O4 N N N 0 0.349 -1.347 0.448
13 O5 O O5 N N N 0 0.06 1.469 0.131
14 O6 O O6 N N N 0 -2.76 1.339 -0.451
15 O7 O O7 N N N 0 4.174 1.671 1.469
16 O1S O O1S N N N 0 -4.549 -0.194 -0.525
17 O2S O O2S N N N 0 -4.227 1.0 1.482
18 O3S O O3S N N N 0 -4.923 2.273 -0.375
19 S1 S S1 N N N 0 -4.204 1.095 -0.036
20 S2 S S2 N N N 0 0.114 -2.85 0.408
21 O5S O O5S N N N 0 -0.009 -3.274 1.759
22 O6S O O6S N N N 0 -0.892 -3.073 -0.57
23 O4S O O4S N N N 0 1.385 -3.491 -0.129
24 H1 H H1 N N N 0 1.38 2.362 -1.185
25 H2 H H2 N N N 0 2.355 0.236 0.778
26 H3 H H3 N N N 0 1.801 0.079 -2.222
27 H4 H H4 N N N 0 -0.051 -1.416 -1.578
28 H5 H H5 N N N 0 -0.533 0.993 -1.79
29 H61 H H6 N N N 0 -2.319 -0.601 -1.008
30 H62 H H7 N N N 0 -1.909 -0.174 0.67
31 H81 H H8 N N N 0 6.028 1.874 -1.171
32 H82 H H9 N N N 0 6.036 3.078 0.14
33 H83 H H10 N N N 0 6.642 1.431 0.439
34 HN2 H H11 N N N 0 3.939 1.037 -1.541
35 HO1 H H12 N N Y 0 1.295 3.63 0.838
36 HO3 H H13 N N Y 0 3.539 -1.349 -1.412
37 H14 H H14 N N N 0 -5.106 0.845 1.854
38 H15 H H15 N N N 0 1.342 -4.455 -0.196