Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8KC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 68


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C21 C C1 N N N 0 0.123 6.023 2.138
2 C20 C C2 N N N 0 0.431 4.579 2.539
3 C19 C C3 N N N 0 0.125 3.647 1.364
4 C18 C C4 N N N 0 0.433 2.203 1.765
5 C17 C C5 S N N 0 0.057 1.264 0.618
6 C10 C C6 N Y N 0 3.948 -0.783 -1.008
7 C11 C C7 N Y N 0 4.057 0.571 -0.685
8 C12 C C8 N Y N 0 4.275 1.489 -1.673
9 C13 C C9 N Y N 0 4.388 1.087 -2.997
10 C14 C C10 N Y N 0 4.284 -0.244 -3.338
11 C16 C C11 N N N 0 0.426 -0.15 0.984
12 C27 C C12 N N N 0 -3.164 0.494 -1.084
13 C28 C C13 N N N 0 -3.327 -0.788 -0.265
14 C29 C C14 N Y N 0 -4.759 -1.252 -0.338
15 C30 C C15 N Y N 0 -5.154 -2.118 -1.341
16 C31 C C16 N Y N 0 -6.468 -2.544 -1.409
17 C02 C C17 N N N 0 1.857 -2.045 3.089
18 C04 C C18 S N N 0 2.067 -1.839 1.611
19 C05 C C19 N N N 0 3.537 -2.088 1.266
20 C06 C C20 N Y N 0 3.723 -2.002 -0.227
21 C07 C C21 N Y N 0 3.715 -3.027 -1.094
22 C09 C C22 N Y N 0 4.069 -1.197 -2.348
23 C23 C C23 S N N 0 -1.711 0.966 -1.01
24 C24 C C24 N N N 0 -1.522 2.157 -1.914
25 C32 C C25 N Y N 0 -7.386 -2.104 -0.474
26 C33 C C26 N Y N 0 -6.991 -1.238 0.529
27 C34 C C27 N Y N 0 -5.676 -0.817 0.6
28 N08 N N1 N Y N 0 3.916 -2.565 -2.366
29 N15 N N2 N N N 0 1.709 -0.464 1.255
30 N22 N N3 N N N 0 -1.389 1.345 0.372
31 O01 O O1 N N N 0 1.449 -1.137 3.774
32 O03 O O2 N N N 0 2.122 -3.238 3.644
33 O25 O O3 N N N 0 -1.641 3.275 -1.473
34 O26 O O4 N N N 0 -1.221 1.975 -3.21
35 O35 O O5 N N N 0 -0.431 -1.007 1.036
36 H211 H H1 N N N 0 -0.93 6.109 1.87
37 H213 H H2 N N N 0 0.341 6.687 2.974
38 H212 H H3 N N N 0 0.739 6.302 1.283
39 H202 H H4 N N N 0 1.484 4.493 2.806
40 H201 H H5 N N N 0 -0.185 4.3 3.394
41 H192 H H6 N N N 0 -0.928 3.734 1.097
42 H191 H H7 N N N 0 0.741 3.926 0.509
43 H182 H H8 N N N 0 1.497 2.105 1.982
44 H181 H H9 N N N 0 -0.144 1.942 2.652
45 H171 H H10 N N N 0 0.595 1.558 -0.284
46 H111 H H11 N N N 0 3.97 0.891 0.343
47 H121 H H12 N N N 0 4.359 2.536 -1.422
48 H131 H H13 N N N 0 4.555 1.825 -3.767
49 H141 H H14 N N N 0 4.373 -0.547 -4.371
50 H272 H H15 N N N 0 -3.43 0.298 -2.123
51 H271 H H16 N N N 0 -3.818 1.268 -0.683
52 H282 H H17 N N N 0 -2.673 -1.561 -0.667
53 H281 H H18 N N N 0 -3.062 -0.591 0.774
54 H301 H H19 N N N 0 -4.437 -2.461 -2.072
55 H311 H H20 N N N 0 -6.776 -3.22 -2.192
56 H041 H H21 N N N 0 1.44 -2.534 1.054
57 H051 H H22 N N N 0 4.157 -1.337 1.753
58 H052 H H23 N N N 0 3.828 -3.08 1.612
59 H071 H H24 N N N 0 3.571 -4.064 -0.826
60 H231 H H25 N N N 0 -1.05 0.159 -1.329
61 H321 H H26 N N N 0 -8.412 -2.436 -0.527
62 H331 H H27 N N N 0 -7.707 -0.898 1.262
63 H341 H H28 N N N 0 -5.367 -0.141 1.383
64 H081 H H29 N N N 0 3.94 -3.118 -3.162
65 H151 H H30 N N N 0 2.394 0.221 1.213
66 H221 H H31 N N N 0 -1.9 0.776 1.031
67 H2 H H33 N N N 0 1.972 -3.323 4.596
68 H3 H H34 N N N 0 -1.11 2.769 -3.75