Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8T9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 65


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 0.466 -0.955 2.177
2 C13 C C2 N N N 0 1.201 -2.292 0.227
3 C15 C C3 N N N 0 1.389 -0.268 -1.17
4 C17 C C4 N N N 0 0.72 -2.425 -2.208
5 C20 C C5 N N N 0 -2.179 0.465 -1.363
6 C21 C C6 N N N 0 -4.247 -0.762 -1.042
7 C22 C C7 N N N 0 -3.13 -0.301 -1.884
8 C24 C C8 N N N 0 -4.373 2.152 -0.24
9 C26 C C9 N N N 0 4.835 2.401 -1.453
10 C01 C C10 R N N 0 -2.234 0.88 0.088
11 C02 C C11 N N N 0 -1.47 -0.116 0.917
12 C03 C C12 N N N 0 -1.561 2.251 0.231
13 C04 C C13 N N N 0 -0.094 2.119 -0.182
14 C05 C C14 S N N 0 0.643 1.159 0.729
15 C06 C C15 N N N 0 -0.218 0.037 1.254
16 C07 C C16 S N N 0 1.86 0.564 0.005
17 C08 C C17 N N N 0 2.542 -0.392 0.975
18 C09 C C18 R N N 0 1.685 -1.551 1.456
19 C11 C C19 N N N 0 1.152 1.967 1.931
20 C12 C C20 N N N 0 3.783 -0.231 1.361
21 O01 O O1 N N N 0 0.518 -3.285 0.332
22 C14 C C21 S N N 0 1.595 -1.767 -1.135
23 O02 O O2 N N N 0 0.872 0.246 -2.136
24 C16 C C22 N N N 0 2.474 -2.475 2.385
25 O03 O O3 N N N 0 2.967 -2.073 -1.395
26 C18 C C23 N N N 0 -2.167 -1.395 1.32
27 C19 C C24 N N N 0 -3.698 0.989 0.511
28 O04 O O4 N N N 0 -4.426 -0.224 0.182
29 O05 O O5 N N N 0 -4.988 -1.646 -1.444
30 C23 C C25 N N N 0 -3.813 1.276 2.012
31 C25 C C26 N N N 0 2.816 1.643 -0.44
32 O06 O O6 N N N 0 2.548 2.805 -0.246
33 O07 O O7 N N N 0 3.964 1.312 -1.052
34 H1 H H1 N N N 0 0.827 -0.419 3.07
35 H2 H H2 N N N 0 -0.164 -1.754 2.533
36 H3 H H3 N N N 0 0.998 -2.042 -3.19
37 H4 H H4 N N N 0 0.867 -3.505 -2.184
38 H5 H H5 N N N 0 -0.328 -2.197 -2.013
39 H6 H H6 N N N 0 -1.366 0.798 -1.982
40 H8 H H8 N N N 0 -3.083 -0.586 -2.925
41 H10 H H10 N N N 0 -4.321 1.97 -1.314
42 H11 H H11 N N N 0 -5.417 2.225 0.066
43 H12 H H12 N N N 0 -3.86 3.084 -0.004
44 H13 H H13 N N N 0 4.307 3.051 -2.151
45 H14 H H14 N N N 0 5.127 2.976 -0.573
46 H15 H H15 N N N 0 5.725 1.997 -1.934
47 H17 H H17 N N N 0 -2.026 2.985 -0.429
48 H18 H H18 N N N 0 -1.616 2.598 1.261
49 H19 H H19 N N N 0 -0.038 1.793 -1.214
50 H20 H H20 N N N 0 0.369 3.109 -0.102
51 H22 H H22 N N N 0 0.307 2.415 2.452
52 H23 H H23 N N N 0 1.69 1.306 2.611
53 H24 H H24 N N N 0 1.822 2.753 1.582
54 H25 H H25 N N N 0 4.36 0.603 0.99
55 H26 H H26 N N N 0 4.229 -0.933 2.05
56 H27 H H27 N N N 0 3.34 -2.87 1.854
57 H28 H H28 N N N 0 2.808 -1.913 3.258
58 H29 H H29 N N N 0 1.837 -3.299 2.705
59 H30 H H30 N N N 0 3.168 -3.019 -1.387
60 H31 H H31 N N N 0 -2.915 -1.652 0.57
61 H32 H H32 N N N 0 -1.435 -2.199 1.395
62 H33 H H33 N N N 0 -2.653 -1.255 2.286
63 H34 H H34 N N N 0 -4.865 1.346 2.289
64 H36 H H36 N N N 0 -3.313 2.217 2.242
65 H35 H H35 N N N 0 -3.343 0.468 2.573