Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 9O7

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C6 R N N 0 3.399 1.332 1.11
2 C2 C C1 N Y N 0 6.754 -0.686 -1.084
3 C2' C C7 R N N 0 2.621 1.931 -0.079
4 C3' C C8 S N N 0 1.283 2.402 0.541
5 C4 C C2 N Y N 0 4.813 -0.527 0.135
6 C4' C C9 N N N 0 1.648 2.527 2.042
7 C5 C C3 N Y N 0 4.708 -1.928 0.131
8 C6 C C4 N Y N 0 5.706 -2.666 -0.528
9 C8 C C5 N Y N 0 3.006 -1.157 1.231
10 H1 H H1 N N N 0 7.579 -0.189 -1.574
11 H10 H H10 N N N 0 0.983 3.366 0.132
12 H11 H H11 N N N 0 -5.708 -0.907 2.464
13 H12 H H12 N N N 0 2.15 3.474 2.238
14 H13 H H13 N N N 0 0.757 2.431 2.663
15 H14 H H14 N N N 0 -6.268 -3.693 1.089
16 H2 H H2 N N N 0 6.352 -4.547 -1.025
17 H3 H H3 N N N 0 4.927 -4.519 -0.134
18 H4 H H4 N N N 0 2.091 -1.12 1.804
19 H5 H H5 N N N 0 4.314 1.901 1.278
20 H6 H H6 N N N 0 -3.372 -0.704 -2.649
21 H7 H H7 N N N 0 2.444 1.171 -0.84
22 H8 H H8 N N N 0 2.888 3.453 -1.387
23 H9 H H9 N N N 0 -0.307 1.306 -2.459
24 N6 N N3 N N N 0 5.657 -4.049 -0.566
25 N7 N N4 N Y N 0 3.584 -2.247 0.816
26 N9 N N5 N Y N 0 3.726 -0.069 0.836
27 O1A O O1 N N N 0 -1.773 2.909 0.131
28 O1B O O2 N N N 0 -3.854 0.042 -2.267
29 O1G O O12 N N N 0 -5.433 -3.262 0.86
30 O2' O O3 N N N 0 3.333 3.038 -0.635
31 O2A O O4 N N N 0 -0.751 2.035 -2.005
32 O2B O O5 N N N 0 -4.417 1.382 -0.204
33 O2G O O6 N N N 0 -6.468 -1.619 -0.752
34 O3' O O7 N N N 0 0.258 1.426 0.345
35 O3A O O8 N N N 0 -2.076 0.454 -0.375
36 O3B O O9 N N N 0 -4.139 -1.111 0.079
37 O3G O O10 N N N 0 -6.233 -0.886 1.653
38 O4' O O11 N N N 0 2.547 1.419 2.264
39 PA P P1 N N N 0 -1.1 1.732 -0.463
40 PB P P2 N N N 0 -3.639 0.218 -0.681
41 PG P P3 N N N 0 -5.588 -1.717 0.434
42 N3 N N2 N Y N 0 5.843 0.046 -0.479
43 N1 N N1 N Y N 0 6.699 -2.005 -1.115