Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 9PB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 94


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 R N N 0 4.138 0.508 2.699
2 C5 C C2 R N N 0 2.643 0.752 2.918
3 C6 C C3 N N N 0 2.401 1.161 4.373
4 C3 C C4 S N N 0 4.379 0.158 1.227
5 CBS C C5 N Y N 0 -8.356 -1.649 -0.535
6 CBT C C6 N Y N 0 -8.934 -1.974 0.705
7 CBY C C7 N Y N 0 -10.004 -1.229 1.228
8 CBX C C8 N Y N 0 -10.54 -1.573 2.432
9 CBW C C9 N Y N 0 -10.042 -2.655 3.155
10 CBV C C10 N Y N 0 -9.007 -3.4 2.679
11 CBU C C11 N Y N 0 -8.428 -3.075 1.44
12 CBP C C12 N Y N 0 -7.358 -3.82 0.916
13 CBQ C C13 N Y N 0 -6.824 -3.477 -0.287
14 CBR C C14 N Y N 0 -7.321 -2.394 -1.01
15 CBN C C15 N N N 0 -6.708 -2.047 -2.342
16 OBO O O1 N N N 0 -5.64 -1.117 -2.147
17 CBM C C16 N N N 0 -4.987 -0.72 -3.355
18 CBL C C17 N Y N 0 -3.885 0.256 -3.032
19 CBH C C18 N Y N 0 -3.535 0.705 -1.804
20 NBK N N1 N Y N 0 -3.057 0.844 -3.903
21 NBJ N N2 N Y N 0 -2.251 1.611 -3.257
22 NBI N N3 N Y N 0 -2.502 1.558 -1.996
23 CAG C C19 R N N 0 -1.789 2.292 -0.947
24 CAK C C20 R N N 0 -0.29 1.995 -1.045
25 OBA O O2 N N N 0 -0.064 0.603 -0.82
26 OAY O O3 N N N 0 -2.008 3.694 -1.115
27 CAI C C21 R N N 0 -1.375 4.506 -0.124
28 CAJ C C22 N N N 0 -1.699 5.978 -0.386
29 OBB O O4 N N N 0 -3.101 6.195 -0.213
30 CAH C C23 R N N 0 0.141 4.298 -0.188
31 OAZ O O5 N N N 0 0.772 5.065 0.84
32 CAL C C24 S N N 0 0.454 2.813 0.016
33 O1 O O6 N N N 0 1.86 2.598 -0.116
34 C1 C C25 S N N 0 2.357 1.505 0.659
35 C2 C C26 R N N 0 3.84 1.291 0.349
36 O2 O O7 N N N 0 3.995 0.942 -1.028
37 O5 O O8 N N N 0 2.2 1.797 2.049
38 O6 O O9 N N N 0 0.996 1.276 4.608
39 O4 O O10 N N N 0 4.572 -0.574 3.526
40 O3 O O11 N N N 0 5.781 0.0 0.997
41 CAM C C27 S N N 0 6.098 -0.922 -0.048
42 OBD O O12 N N N 0 5.681 -2.235 0.332
43 CAO C C28 R N N 0 5.929 -3.235 -0.659
44 CAP C C29 N N N 0 5.418 -4.587 -0.157
45 OBG O O13 N N N 0 3.997 -4.538 -0.018
46 CAN C C30 S N N 0 7.434 -3.325 -0.925
47 OBE O O14 N N N 0 7.68 -4.283 -1.956
48 CAR C C31 S N N 0 7.948 -1.952 -1.37
49 OBC O O15 N N N 0 9.365 -2.008 -1.55
50 CAQ C C32 R N N 0 7.61 -0.919 -0.291
51 OBF O O16 N N N 0 8.02 0.379 -0.726
52 H1 H H1 N N N 0 4.696 1.409 2.955
53 H2 H H2 N N N 0 2.089 -0.161 2.701
54 H3 H H3 N N N 0 2.82 0.406 5.037
55 H4 H H4 N N N 0 2.882 2.121 4.565
56 H5 H H5 N N N 0 3.862 -0.77 0.983
57 H6 H H6 N N N 0 -8.734 -0.816 -1.108
58 H7 H H7 N N N 0 -10.4 -0.387 0.679
59 H8 H H8 N N N 0 -11.362 -0.999 2.832
60 H9 H H9 N N N 0 -10.485 -2.907 4.107
61 H10 H H10 N N N 0 -8.631 -4.235 3.251
62 H11 H H11 N N N 0 -6.962 -4.661 1.466
63 H12 H H12 N N N 0 -6.002 -4.051 -0.687
64 H13 H H13 N N N 0 -6.32 -2.951 -2.811
65 H14 H H14 N N N 0 -7.465 -1.6 -2.986
66 H15 H H15 N N N 0 -4.564 -1.597 -3.844
67 H16 H H16 N N N 0 -5.709 -0.246 -4.019
68 H17 H H17 N N N 0 -3.988 0.437 -0.862
69 H18 H H18 N N N 0 -2.159 1.981 0.03
70 H19 H H19 N N N 0 0.071 2.269 -2.036
71 H20 H H20 N N N 0 -0.51 0.024 -1.453
72 H21 H H21 N N N 0 -1.739 4.224 0.864
73 H22 H H22 N N N 0 -1.146 6.603 0.315
74 H23 H H23 N N N 0 -1.415 6.237 -1.406
75 H24 H H24 N N N 0 -3.38 7.108 -0.363
76 H25 H H25 N N N 0 0.512 4.62 -1.161
77 H26 H H26 N N N 0 0.612 6.016 0.776
78 H27 H H27 N N N 0 0.128 2.504 1.009
79 H28 H H28 N N N 0 1.799 0.602 0.412
80 H29 H H29 N N N 0 4.392 2.207 0.558
81 H30 H H30 N N N 0 3.673 1.617 -1.643
82 H31 H H31 N N N 0 0.769 1.533 5.512
83 H32 H H32 N N N 0 4.444 -0.421 4.472
84 H33 H H33 N N N 0 5.583 -0.627 -0.962
85 H34 H H34 N N N 0 5.411 -2.97 -1.58
86 H35 H H35 N N N 0 5.687 -5.365 -0.872
87 H36 H H36 N N N 0 5.871 -4.811 0.809
88 H37 H H37 N N N 0 3.604 -5.363 0.298
89 H38 H H38 N N N 0 7.948 -3.629 -0.014
90 H39 H H39 N N N 0 8.615 -4.392 -2.178
91 H40 H H40 N N N 0 7.471 -1.67 -2.309
92 H41 H H41 N N N 0 9.758 -1.171 -1.832
93 H42 H H42 N N N 0 8.127 -1.174 0.634
94 H43 H H43 N N N 0 7.832 1.085 -0.093