Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 9PE

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 100


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P S N N 0 -5.574 2.729 -0.696
2 N N N N N N 0 -8.658 0.669 -3.064
3 O11 O O11 N N N 0 -4.967 1.706 0.389
4 O12 O O12 N N N 0 -6.527 3.645 -0.032
5 O13 O O13 N N N 0 -6.338 1.901 -1.846
6 O14 O O14 N N N 0 -4.378 3.584 -1.355
7 C11 C C11 N N N 0 -7.072 2.528 -2.899
8 C12 C C12 N N N 0 -7.669 1.455 -3.813
9 C1 C C1 N N N 0 -4.321 2.137 1.589
10 C2 C C2 R N N 0 -3.866 0.916 2.39
11 C3 C C3 N N N 0 -5.062 -0.005 2.639
12 O31 O O31 N N N 0 -5.685 -0.343 1.371
13 O32 O O32 N N N 0 -7.161 -1.561 2.477
14 C31 C C31 N N N 0 -6.756 -1.15 1.415
15 C32 C C32 N N N 0 -7.455 -1.545 0.139
16 C33 C C33 N N N 0 -8.635 -2.461 0.466
17 C37 C C37 N N N 0 -12.414 -5.096 -1.471
18 C34 C C34 N N N 0 -9.344 -2.862 -0.83
19 C35 C C35 N N N 0 -10.525 -3.779 -0.502
20 C36 C C36 N N N 0 -11.234 -4.179 -1.798
21 O21 O O21 N N N 0 -2.849 0.197 1.643
22 O22 O O22 N N N 0 -1.313 1.439 2.633
23 C21 C C21 N N N 0 -1.573 0.555 1.852
24 C22 C C22 N N N 0 -0.463 -0.146 1.111
25 C23 C C23 N N N 0 0.883 0.448 1.529
26 C24 C C24 N N N 0 2.01 -0.263 0.777
27 C25 C C25 N N N 0 3.357 0.331 1.195
28 C26 C C26 N N N 0 4.484 -0.381 0.444
29 C27 C C27 N N N 0 5.83 0.213 0.861
30 C28 C C28 N N N 0 6.957 -0.498 0.11
31 C29 C C29 N N N 0 8.303 0.096 0.528
32 C2A C C2A N N N 0 9.43 -0.616 -0.224
33 C2B C C2B N N N 0 10.777 -0.022 0.194
34 C2C C C2C N N N 0 11.903 -0.733 -0.558
35 C2D C C2D N N N 0 13.25 -0.139 -0.14
36 C2E C C2E N N N 0 14.377 -0.851 -0.891
37 C2F C C2F N N N 0 15.723 -0.257 -0.474
38 C2G C C2G N N N 0 16.85 -0.969 -1.225
39 C2H C C2H N N N 0 18.197 -0.374 -0.808
40 C2I C C2I N N N 0 19.323 -1.086 -1.559
41 HN H HN N N N 0 -9.37 1.265 -2.67
42 HNA H HNA N N N 0 -9.067 -0.047 -3.646
43 HO14 H HO14 N N N 0 -3.714 3.046 -1.808
44 H11 H H11 N N N 0 -7.875 3.13 -2.474
45 H11A H H11A N N N 0 -6.405 3.167 -3.477
46 H12 H H12 N N N 0 -6.876 0.798 -4.168
47 H12A H H12A N N N 0 -8.154 1.933 -4.665
48 H1 H H1 N N N 0 -3.455 2.748 1.335
49 H1A H H1A N N N 0 -5.018 2.725 2.186
50 H2 H H2 N N N 0 -3.453 1.241 3.345
51 H3 H H3 N N N 0 -4.723 -0.916 3.132
52 H3A H H3A N N N 0 -5.787 0.504 3.275
53 H32 H H32 N N N 0 -7.819 -0.65 -0.368
54 H32A H H32A N N N 0 -6.755 -2.071 -0.511
55 H33 H H33 N N N 0 -8.271 -3.356 0.972
56 H33A H H33A N N N 0 -9.335 -1.935 1.115
57 H34 H H34 N N N 0 -9.708 -1.968 -1.336
58 H34A H H34A N N N 0 -8.645 -3.388 -1.479
59 H35 H H35 N N N 0 -10.161 -4.673 0.004
60 H35A H H35A N N N 0 -11.224 -3.253 0.147
61 H36 H H36 N N N 0 -11.597 -3.285 -2.304
62 H36A H H36A N N N 0 -10.534 -4.705 -2.447
63 H37 H H37 N N N 0 -13.114 -4.57 -0.821
64 H37A H H37A N N N 0 -12.919 -5.381 -2.393
65 H37B H H37B N N N 0 -12.05 -5.99 -0.964
66 H22 H H22 N N N 0 -0.481 -1.209 1.351
67 H22A H H22A N N N 0 -0.601 -0.013 0.038
68 H23 H H23 N N N 0 0.902 1.512 1.289
69 H23A H H23A N N N 0 1.022 0.316 2.602
70 H24 H H24 N N N 0 1.992 -1.326 1.017
71 H24A H H24A N N N 0 1.872 -0.131 -0.296
72 H25 H H25 N N N 0 3.375 1.394 0.955
73 H25A H H25A N N N 0 3.495 0.198 2.268
74 H26 H H26 N N N 0 4.465 -1.444 0.684
75 H26A H H26A N N N 0 4.345 -0.248 -0.629
76 H27 H H27 N N N 0 5.848 1.276 0.622
77 H27A H H27A N N N 0 5.969 0.081 1.934
78 H28 H H28 N N N 0 6.939 -1.561 0.35
79 H28A H H28A N N N 0 6.818 -0.366 -0.963
80 H29 H H29 N N N 0 8.322 1.159 0.288
81 H29A H H29A N N N 0 8.442 -0.037 1.601
82 H2A H H2A N N N 0 9.412 -1.679 0.016
83 H2AA H H2AA N N N 0 9.292 -0.483 -1.297
84 H2B H H2B N N N 0 10.795 1.041 -0.046
85 H2BA H H2BA N N N 0 10.915 -0.154 1.267
86 H2C H H2C N N N 0 11.885 -1.797 -0.318
87 H2CA H H2CA N N N 0 11.765 -0.601 -1.631
88 H2D H H2D N N N 0 13.268 0.924 -0.38
89 H2DA H H2DA N N N 0 13.389 -0.272 0.933
90 H2E H H2E N N N 0 14.359 -1.914 -0.651
91 H2EA H H2EA N N N 0 14.238 -0.718 -1.964
92 H2F H H2F N N N 0 15.741 0.806 -0.714
93 H2FA H H2FA N N N 0 15.862 -0.389 0.599
94 H2G H H2G N N N 0 16.832 -2.032 -0.985
95 H2GA H H2GA N N N 0 16.712 -0.836 -2.298
96 H2H H H2H N N N 0 18.215 0.689 -1.047
97 H2HA H H2HA N N N 0 18.335 -0.507 0.266
98 H2I H H2I N N N 0 19.305 -2.149 -1.319
99 H2IA H H2IA N N N 0 19.185 -0.953 -2.632
100 H2IB H H2IB N N N 0 20.283 -0.663 -1.261