Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 9ZD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O3P O O1 N N N 0 3.409 -3.045 -0.993
2 P P P1 N N N 0 3.194 -2.04 0.246
3 O2P O O2 N N N 0 2.894 -2.819 1.468
4 O5' O O3 N N N 0 1.966 -1.049 -0.074
5 C5' C C1 N N N 0 1.392 -0.18 0.905
6 C4' C C2 R N N 0 0.251 0.619 0.271
7 C3' C C3 S N N 0 -0.329 1.627 1.288
8 O3' O O4 N N N 0 0.22 2.929 1.07
9 C2' C C4 R N N 0 -1.846 1.624 0.996
10 O2' O O5 N N N 0 -2.281 2.924 0.593
11 C1' C C5 R N N 0 -2.003 0.614 -0.162
12 O4' O O6 N N N 0 -0.852 -0.253 -0.057
13 N9 N N1 N Y N 0 -3.239 -0.156 -0.002
14 C4 C C6 N Y N 0 -4.491 0.221 -0.418
15 C5 C C7 N Y N 0 -5.353 -0.826 -0.053
16 N7 N N2 N Y N 0 -4.597 -1.772 0.555
17 C8 C C8 N Y N 0 -3.355 -1.383 0.582
18 N3 N N3 N Y N 0 -4.993 1.285 -1.038
19 C2 C C9 N Y N 0 -6.279 1.359 -1.308
20 N1 N N4 N Y N 0 -7.127 0.4 -0.985
21 C6 C C10 N Y N 0 -6.719 -0.699 -0.359
22 N6 N N5 N N N 0 -7.615 -1.698 -0.025
23 N2 N N6 N N N 0 4.595 -1.138 0.486
24 C3 C C11 R N N 0 4.924 -0.349 -0.709
25 C7 C C12 N N N 0 5.527 0.967 -0.292
26 C9 C C13 N N N 0 5.929 -1.121 -1.568
27 O10 O O7 N N N 0 5.668 1.223 0.881
28 O11 O O8 N N N 0 5.908 1.856 -1.222
29 C12 C C14 N N N 0 6.48 3.103 -0.748
30 H1 H H1 N N N 0 3.61 -2.602 -1.829
31 H2 H H2 N N N 0 1.004 -0.773 1.734
32 H3 H H3 N N N 0 2.154 0.505 1.275
33 H4 H H4 N N N 0 0.603 1.138 -0.62
34 H5 H H5 N N N 0 -0.133 1.297 2.308
35 H6 H H6 N N N 0 -0.11 3.602 1.681
36 H7 H H7 N N N 0 -2.402 1.291 1.872
37 H8 H H8 N N N 0 -2.149 3.608 1.263
38 H9 H H9 N N N 0 -2.0 1.132 -1.121
39 H10 H H10 N N N 0 -2.539 -1.946 1.009
40 H11 H H11 N N N 0 -6.654 2.237 -1.813
41 H12 H H12 N N N 0 -8.555 -1.601 -0.247
42 H13 H H13 N N N 0 -7.305 -2.496 0.432
43 H14 H H14 N N N 0 4.508 -0.545 1.298
44 H15 H H15 N N N 0 4.017 -0.167 -1.286
45 H16 H H16 N N N 0 6.835 -1.303 -0.991
46 H17 H H17 N N N 0 5.493 -2.073 -1.87
47 H18 H H18 N N N 0 6.173 -0.536 -2.454
48 H19 H H19 N N N 0 5.752 3.624 -0.126
49 H20 H H20 N N N 0 7.374 2.892 -0.161
50 H21 H H21 N N N 0 6.744 3.73 -1.6