Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OP3 O O3P N N Y 0 2.135 -1.141 -5.313
2 P P P N N N 0 1.024 -0.137 -4.723
3 OP1 O O1P N N N 0 1.633 1.19 -4.488
4 C4' C C4* R N N 0 -1.101 -0.287 -1.538
5 OP2 O O2P N N N 0 -0.183 0.005 -5.778
6 O5' O O5* N N N 0 0.456 -0.72 -3.334
7 C5' C C5* N N N 0 -0.52 0.209 -2.863
8 O3' O O3* N N N 0 -3.445 0.36 -1.287
9 O4' O O4* N N N 0 -0.064 -0.383 -0.538
10 C3' C C3* S N N 0 -2.105 0.739 -0.969
11 C2' C C2* R N N 0 -1.874 0.684 0.558
12 O2' O O2* N N N 0 -3.065 0.271 1.231
13 C1' C C1* R N N 0 -0.755 -0.367 0.729
14 N9 N N9 N Y N 0 0.158 0.029 1.803
15 C8 C C8 N Y N 0 1.265 0.813 1.672
16 N7 N N7 N Y N 0 1.843 0.963 2.828
17 C5 C C5 N Y N 0 1.143 0.292 3.773
18 C6 C C6 N Y N 0 1.29 0.091 5.156
19 N6 N N6 N N N 0 2.344 0.664 5.846
20 N1 N N1 N Y N 0 0.391 -0.656 5.787
21 C2 C C2 N Y N 0 -0.617 -1.206 5.136
22 N3 N N3 N Y N 0 -0.792 -1.051 3.841
23 C4 C C4 N Y N 0 0.056 -0.32 3.126
24 HOP3 H 3HOP N N N 0 2.448 -0.755 -6.142
25 HOP2 H 2HOP N N N 0 -0.552 -0.879 -5.902
26 H5' H 1H5* N N N 0 -1.319 0.301 -3.599
27 H5'' H 2H5* N N N 0 -0.052 1.182 -2.712
28 H4' H H4* N N N 0 -1.586 -1.254 -1.677
29 H3' H H3* N N N 0 -1.89 1.736 -1.353
30 HO3' H H3T N N Y 0 -4.024 1.035 -0.908
31 H2' H H2* N N N 0 -1.543 1.654 0.93
32 HO2' H 2HO* N N N 0 -3.74 0.936 1.037
33 H1' H H1* N N N 0 -1.185 -1.346 0.94
34 H8 H H8 N N N 0 1.611 1.246 0.745
35 H61 H 1H6 N N N 0 2.432 0.522 6.801
36 H62 H 2H6 N N N 0 2.996 1.205 5.374
37 H2 H H2 N N N 0 -1.325 -1.807 5.688