Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : A1AKZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -1.325 -1.037 0.337
2 N3 N N2 N Y N 0 -5.883 0.824 1.223
3 C4 C C1 N Y N 0 1.041 -0.249 1.681
4 C5 C C2 N Y N 0 1.06 -0.585 0.339
5 C6 C C3 R N N 0 -0.039 -1.44 -0.238
6 C7 C C4 N N N 0 0.23 -2.909 0.094
7 C8 C C5 N N N 0 -0.791 -3.775 -0.597
8 C10 C C6 N Y N 0 -3.404 0.258 0.257
9 C13 C C7 N Y N 0 -5.117 2.923 -1.542
10 C15 C C8 N Y N 0 -4.177 1.264 -0.341
11 O4 O O1 N N N 0 -1.598 0.542 -1.201
12 C9 C C9 N N N 0 -2.052 -0.067 -0.252
13 C14 C C10 N Y N 0 -3.995 2.185 -1.457
14 N4 N N3 N Y N 0 -6.0 2.544 -0.567
15 C12 C C11 N Y N 0 -5.463 1.534 0.185
16 C11 C C12 N Y N 0 -5.121 -0.112 1.753
17 N2 N N4 N Y N 0 -3.919 -0.398 1.296
18 O3 O O2 N N N 0 -0.693 -5.112 -0.529
19 O2 O O3 N N N 0 -1.698 -3.267 -1.212
20 C3 C C13 N Y N 0 2.044 0.54 2.213
21 C2 C C14 N Y N 0 3.068 0.996 1.405
22 C16 C C15 N Y N 0 2.083 -0.137 -0.473
23 C1 C C16 N Y N 0 3.089 0.661 0.058
24 N N N5 N N N 0 4.123 1.12 -0.762
25 S S S1 N N N 0 5.692 1.038 -0.24
26 O O O4 N N N 0 6.445 1.607 -1.302
27 O1 O O5 N N N 0 5.666 1.643 1.046
28 C C C17 N N N 0 6.03 -0.738 -0.1
29 H12 H H1 N N N 0 -1.654 -1.47 1.14
30 H8 H H2 N N N 0 0.24 -0.601 2.313
31 H H H3 N N N 0 -0.069 -1.312 -1.32
32 H9 H H4 N N N 0 1.229 -3.182 -0.247
33 H10 H H5 N N N 0 0.161 -3.056 1.172
34 H14 H H6 N N N 0 -5.295 3.7 -2.271
35 H15 H H7 N N N 0 -3.126 2.26 -2.094
36 H1 H H8 N N N 0 -6.878 2.933 -0.43
37 H13 H H9 N N N 0 -5.499 -0.669 2.597
38 H11 H H10 N N N 0 -1.371 -5.626 -0.989
39 H7 H H11 N N N 0 2.027 0.8 3.261
40 H6 H H12 N N N 0 3.851 1.613 1.821
41 H16 H H13 N N N 0 2.097 -0.4 -1.52
42 H5 H H14 N N N 0 3.922 1.488 -1.637
43 H4 H H15 N N N 0 5.9 -1.211 -1.073
44 H3 H H16 N N N 0 7.055 -0.888 0.243
45 H2 H H17 N N N 0 5.34 -1.185 0.616