Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : A1AMJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 0.197 -0.71 0.391
2 N3 N N2 N N N 0 -6.493 1.414 -0.805
3 C4 C C1 N Y N 0 3.068 0.47 0.209
4 C5 C C2 N Y N 0 2.546 -0.771 -0.21
5 C6 C C3 N Y N 0 1.273 -1.372 -0.164
6 C7 C C4 S N N 0 -1.119 -1.352 0.429
7 C8 C C5 N Y N 0 -2.192 -0.296 0.492
8 C10 C C6 N Y N 0 -2.97 1.809 1.357
9 C13 C C7 N N N 0 -7.759 1.354 -1.541
10 C15 C C8 N Y N 0 -4.342 0.521 -0.171
11 C17 C C9 N N N 0 -1.213 -2.249 1.665
12 C20 C C10 N Y N 0 2.158 -3.234 -1.201
13 C21 C C11 N Y N 0 3.609 -1.495 -0.789
14 O1 O O1 N N N 0 -5.818 -0.551 -1.646
15 C14 C C12 N N N 0 -5.596 0.409 -0.932
16 C12 C C13 N N N 0 -6.228 2.482 -0.008
17 N2 N N3 N N N 0 -5.129 2.611 0.671
18 C11 C C14 N Y N 0 -4.152 1.671 0.628
19 C9 C C15 N Y N 0 -2.004 0.83 1.283
20 C16 C C16 N Y N 0 -3.354 -0.458 -0.231
21 C19 C C17 N N N 0 -2.588 -2.92 1.705
22 C18 C C18 N N N 0 -0.124 -3.321 1.602
23 N4 N N4 N Y N 0 1.133 -2.594 -0.669
24 N5 N N5 N Y N 0 3.365 -2.714 -1.266
25 N6 N N6 N Y N 0 4.725 -0.71 -0.716
26 C3 C C19 N Y N 0 4.39 0.49 -0.112
27 C2 C C20 N N N 0 5.315 1.6 0.149
28 O O O2 N N N 0 4.914 2.611 0.696
29 N N N7 N N N 0 6.608 1.5 -0.218
30 C1 C C21 N N N 0 7.531 2.608 0.042
31 C C C22 N N N 0 8.925 2.241 -0.468
32 H9 H H1 N N N 0 0.313 0.18 0.76
33 H8 H H2 N N N 0 2.517 1.264 0.693
34 H H H3 N N N 0 -1.255 -1.955 -0.468
35 H11 H H4 N N N 0 -2.812 2.68 1.975
36 H13 H H5 N N N 0 -8.509 0.85 -0.931
37 H15 H H6 N N N 0 -8.095 2.365 -1.768
38 H24 H H9 N N N 0 2.0 -4.225 -1.599
39 H14 H H7 N N N 0 -7.614 0.801 -2.469
40 H17 H H8 N N N 0 -1.077 -1.646 2.563
41 H12 H H10 N N N 0 -6.97 3.263 0.065
42 H10 H H11 N N N 0 -1.088 0.941 1.844
43 H16 H H12 N N N 0 -3.494 -1.336 -0.845
44 H22 H H13 N N N 0 -2.724 -3.523 0.807
45 H21 H H14 N N N 0 -2.655 -3.559 2.586
46 H23 H H15 N N N 0 -3.364 -2.156 1.75
47 H18 H H16 N N N 0 0.855 -2.843 1.573
48 H19 H H17 N N N 0 -0.191 -3.96 2.482
49 H20 H H18 N N N 0 -0.26 -3.924 0.704
50 H1 H H19 N N N 0 5.607 -0.953 -1.038
51 H7 H H20 N N N 0 6.928 0.695 -0.654
52 H6 H H21 N N N 0 7.179 3.502 -0.473
53 H5 H H22 N N N 0 7.575 2.8 1.114
54 H3 H H23 N N N 0 9.277 1.347 0.047
55 H2 H H24 N N N 0 8.881 2.049 -1.541
56 H4 H H25 N N N 0 9.612 3.065 -0.275