![spacer](http://www.ebi.ac.uk/inc/images/spacer.gif) |
PDBeChem : Atoms of Molecule
Molecule : A2P
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 42
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
P1 |
P |
P1 |
N |
N |
N |
0 |
2.638 |
-0.404 |
2.274 |
2 |
O1P |
O |
O1P |
N |
N |
N |
0 |
3.273 |
-1.585 |
1.647 |
3 |
O2P |
O |
O2P |
N |
N |
N |
0 |
3.697 |
0.321 |
3.246 |
4 |
O3P |
O |
O3P |
N |
N |
N |
0 |
1.358 |
-0.873 |
3.13 |
5 |
P2 |
P |
P2 |
N |
N |
N |
0 |
-0.842 |
-0.078 |
-5.412 |
6 |
O4P |
O |
O4P |
N |
N |
N |
0 |
-1.159 |
-1.507 |
-5.196 |
7 |
O5P |
O |
O5P |
N |
N |
N |
0 |
-2.04 |
0.619 |
-6.23 |
8 |
O6P |
O |
O6P |
N |
N |
N |
0 |
0.525 |
0.046 |
-6.252 |
9 |
O5' |
O |
O5* |
N |
N |
N |
0 |
-0.666 |
0.653 |
-3.988 |
10 |
C5' |
C |
C5* |
N |
N |
N |
0 |
0.405 |
-0.008 |
-3.313 |
11 |
C4' |
C |
C4* |
R |
N |
N |
0 |
0.625 |
0.641 |
-1.946 |
12 |
O4' |
O |
O4* |
N |
N |
N |
0 |
-0.559 |
0.51 |
-1.13 |
13 |
C3' |
C |
C3* |
R |
N |
N |
0 |
1.727 |
-0.105 |
-1.164 |
14 |
O3' |
O |
O3* |
N |
N |
N |
0 |
2.978 |
0.574 |
-1.288 |
15 |
C2' |
C |
C2* |
R |
N |
N |
0 |
1.236 |
-0.073 |
0.302 |
16 |
O2' |
O |
O2* |
N |
N |
N |
0 |
2.17 |
0.625 |
1.128 |
17 |
C1' |
C |
C1* |
R |
N |
N |
0 |
-0.106 |
0.686 |
0.229 |
18 |
N9 |
N |
N9 |
N |
Y |
N |
0 |
-1.071 |
0.107 |
1.167 |
19 |
C8 |
C |
C8 |
N |
Y |
N |
0 |
-1.93 |
-0.919 |
0.91 |
20 |
N7 |
N |
N7 |
N |
Y |
N |
0 |
-2.644 |
-1.177 |
1.967 |
21 |
C5 |
C |
C5 |
N |
Y |
N |
0 |
-2.286 |
-0.338 |
2.968 |
22 |
C6 |
C |
C6 |
N |
Y |
N |
0 |
-2.706 |
-0.148 |
4.296 |
23 |
N6 |
N |
N6 |
N |
N |
N |
0 |
-3.7 |
-0.939 |
4.844 |
24 |
N1 |
N |
N1 |
N |
Y |
N |
0 |
-2.122 |
0.805 |
5.014 |
25 |
C2 |
C |
C2 |
N |
Y |
N |
0 |
-1.173 |
1.565 |
4.499 |
26 |
N3 |
N |
N3 |
N |
Y |
N |
0 |
-0.752 |
1.427 |
3.26 |
27 |
C4 |
C |
C4 |
N |
Y |
N |
0 |
-1.277 |
0.5 |
2.465 |
28 |
HOP2 |
H |
2HOP |
N |
N |
N |
0 |
3.951 |
-0.328 |
3.916 |
29 |
HOP3 |
H |
3HOP |
N |
N |
N |
0 |
0.975 |
-0.075 |
3.52 |
30 |
HOP5 |
H |
5HOP |
N |
N |
N |
0 |
-2.111 |
0.153 |
-7.074 |
31 |
HOP6 |
H |
6HOP |
N |
N |
N |
0 |
0.695 |
0.991 |
-6.37 |
32 |
H5'1 |
H |
1H5* |
N |
N |
N |
0 |
1.315 |
0.076 |
-3.907 |
33 |
H5'2 |
H |
2H5* |
N |
N |
N |
0 |
0.155 |
-1.06 |
-3.179 |
34 |
H4' |
H |
H4* |
N |
N |
N |
0 |
0.889 |
1.692 |
-2.064 |
35 |
H3' |
H |
H3* |
N |
N |
N |
0 |
1.816 |
-1.133 |
-1.516 |
36 |
HO3' |
H |
*HO3 |
N |
N |
N |
0 |
3.203 |
0.576 |
-2.229 |
37 |
H2' |
H |
H2* |
N |
N |
N |
0 |
1.081 |
-1.085 |
0.675 |
38 |
H1' |
H |
H1* |
N |
N |
N |
0 |
0.043 |
1.744 |
0.445 |
39 |
H8 |
H |
H8 |
N |
N |
N |
0 |
-2.006 |
-1.441 |
-0.032 |
40 |
HN61 |
H |
1HN6 |
N |
N |
N |
0 |
-3.978 |
-0.801 |
5.763 |
41 |
HN62 |
H |
2HN6 |
N |
N |
N |
0 |
-4.121 |
-1.63 |
4.308 |
42 |
H2 |
H |
H2 |
N |
N |
N |
0 |
-0.726 |
2.328 |
5.119 |
|