Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AMG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 27


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 1.208 -0.638 -0.268
2 C2 C C2 R N N 0 0.362 -0.549 -1.54
3 C3 C C3 S N N 0 -0.616 0.621 -1.409
4 C4 C C4 R N N 0 -1.409 0.454 -0.109
5 C5 C C5 R N N 0 -0.43 0.29 1.055
6 C6 C C6 N N N 0 -1.214 0.154 2.362
7 C7 C C7 N N N 0 2.685 0.445 1.113
8 O1 O O1 N N N 0 1.914 0.59 -0.08
9 O2 O O2 N N N 0 1.213 -0.337 -2.667
10 O3 O O3 N N N 0 -1.513 0.627 -2.521
11 O4 O O4 N N N 0 -2.242 -0.703 -0.2
12 O5 O O5 N N N 0 0.365 -0.877 0.856
13 O6 O O6 N N N 0 -0.301 0.008 3.452
14 H1 H H1 N N N 0 1.923 -1.455 -0.365
15 H2 H H2 N N N 0 -0.195 -1.476 -1.673
16 H3 H H3 N N N 0 -0.062 1.56 -1.381
17 H4 H H4 N N N 0 -2.028 1.335 0.056
18 H5 H H5 N N N 0 0.217 1.165 1.109
19 H61 H H61 N N N 0 -1.822 1.046 2.515
20 H62 H H62 N N N 0 -1.86 -0.721 2.309
21 H71 H H71 N N N 0 3.243 1.363 1.299
22 H72 H H72 N N N 0 2.019 0.249 1.954
23 H73 H H73 N N N 0 3.38 -0.385 0.999
24 HO2 H HO2 N N Y 0 1.812 -1.095 -2.712
25 HO3 H HO3 N N Y 0 -0.973 0.735 -3.316
26 HO4 H HO4 N N Y 0 -2.842 -0.558 -0.944
27 HO6 H HO6 N N Y 0 -0.834 -0.073 4.254