Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : API

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 27


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C1 N N N 0 3.726 -0.379 -0.101
2 CA C C2 S N N 0 2.498 0.269 0.486
3 C3 C C3 N N N 0 1.249 -0.295 -0.194
4 C4 C C4 N N N 0 0.0 0.269 0.486
5 C5 C C5 N N N 0 -1.25 -0.295 -0.193
6 C6 C C6 R N N 0 -2.499 0.269 0.486
7 C7 C C7 N N N 0 -3.726 -0.379 -0.1
8 O O O1 N N N 0 4.374 0.203 -0.938
9 OXT O O2 N N Y 0 4.101 -1.6 0.309
10 O3 O O3 N N N 0 -4.375 0.203 -0.937
11 O4 O O4 N N N 0 -4.098 -1.602 0.307
12 N N N2 N N N 0 2.56 1.721 0.269
13 N6 N N6 N N N 0 -2.56 1.721 0.27
14 HA H H2 N N N 0 2.455 0.063 1.555
15 H31 H H31 N N N 0 1.249 -0.012 -1.246
16 H32 H H32 N N N 0 1.249 -1.382 -0.109
17 H41 H H41 N N N 0 0.0 -0.013 1.539
18 H42 H H42 N N N 0 0.0 1.356 0.402
19 H51 H H51 N N N 0 -1.25 -0.012 -1.246
20 H52 H H52 N N N 0 -1.25 -1.382 -0.109
21 H6 H H6 N N N 0 -2.455 0.063 1.556
22 HXT H HO2 N N Y 0 4.895 -1.975 -0.096
23 HO4 H HO4 N N N 0 -4.893 -1.977 -0.098
24 H H HN21 N N N 0 2.601 1.938 -0.715
25 H2 H HN22 N N Y 0 1.781 2.186 0.71
26 HN61 H HN61 N N N 0 -1.781 2.186 0.711
27 HN62 H HN62 N N N 0 -2.602 1.939 -0.714