Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : AVI

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CAL C C1 N N N 0 1.617 -1.859 -1.238
2 N N N1 N N N 0 0.771 -1.219 -0.222
3 CAM C C2 N N N 0 1.156 -1.648 1.129
4 CA C C3 S N N 0 0.817 0.244 -0.344
5 C C C4 N N N 0 2.211 0.729 -0.039
6 OXT O O1 N N N 0 2.49 2.041 -0.089
7 O O O2 N N N 0 3.077 -0.062 0.25
8 CB C C5 N N N 0 -0.169 0.869 0.645
9 CG C C6 N Y N 0 -1.575 0.482 0.265
10 ND1 N N2 N Y N 0 -2.149 0.674 -0.931
11 CE1 C C7 N Y N 0 -3.371 0.216 -0.9
12 NE2 N N3 N Y N 0 -3.614 -0.286 0.329
13 CD2 C C8 N Y N 0 -2.473 -0.123 1.066
14 HE2 H H1 N N N 0 1.564 -2.942 -1.126
15 HE3 H H2 N N N 0 1.266 -1.58 -2.232
16 HAL H H3 N N N 0 2.649 -1.531 -1.112
17 HE4 H H5 N N N 0 2.194 -1.373 1.316
18 HAM H H6 N N N 0 0.513 -1.159 1.862
19 HE5 H H7 N N N 0 1.045 -2.729 1.213
20 HA H H8 N N N 0 0.546 0.533 -1.36
21 H1 H H9 N N N 0 3.398 2.305 0.115
22 HB1 H H10 N N N 0 0.048 0.51 1.651
23 HB2 H H11 N N N 0 -0.071 1.955 0.618
24 HE1 H H13 N N N 0 -4.072 0.237 -1.722
25 HKL H H14 N N N 0 -4.441 -0.693 0.632
26 HD2 H H15 N N N 0 -2.323 -0.417 2.095