Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AYV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 32


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 1.258 -0.734 -0.474
2 C4 C C1 N N N 0 2.536 1.287 0.039
3 C5 C C2 N N N 0 0.032 -0.285 -0.141
4 C6 C C3 N Y N 0 -2.335 -0.358 -0.379
5 C7 C C4 N Y N 0 -3.395 -1.251 -0.46
6 C8 C C5 N Y N 0 -4.658 -0.859 -0.061
7 C10 C C6 N Y N 0 -3.813 1.313 0.5
8 C1 C C7 N N N 0 2.32 -0.548 1.722
9 C2 C C8 N N N 0 2.439 -0.228 0.23
10 C3 C C9 N N N 0 3.694 -0.894 -0.336
11 O1 O O1 N N N 0 4.847 -0.401 0.35
12 O2 O O2 N N N 0 2.53 1.593 -1.357
13 O3 O O3 N N N 0 -0.095 0.54 0.743
14 N2 N N2 N N N 0 -1.055 -0.751 -0.788
15 C9 C C10 N Y N 0 -4.867 0.421 0.419
16 C11 C C11 N Y N 0 -2.548 0.927 0.103
17 H1 H H1 N N N 0 1.358 -1.395 -1.176
18 H2 H H2 N N N 0 1.685 1.769 0.521
19 H3 H H3 N N N 0 3.461 1.651 0.487
20 H4 H H4 N N N 0 -3.233 -2.251 -0.835
21 H5 H H5 N N N 0 -5.483 -1.553 -0.124
22 H6 H H6 N N N 0 -3.979 2.312 0.875
23 H7 H H7 N N N 0 2.251 -1.627 1.857
24 H8 H H8 N N N 0 3.199 -0.171 2.245
25 H9 H H9 N N N 0 1.426 -0.073 2.125
26 H10 H H10 N N N 0 3.625 -1.974 -0.2
27 H11 H H11 N N N 0 3.779 -0.666 -1.399
28 H12 H H12 N N N 0 5.681 -0.781 0.042
29 H13 H H13 N N N 0 2.589 2.538 -1.552
30 H14 H H14 N N N 0 -0.95 -1.358 -1.537
31 H15 H H15 N N N 0 -5.855 0.725 0.73
32 H16 H H16 N N N 0 -1.726 1.625 0.164