Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : B3L

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O O O N N N 0 2.383 -1.147 -0.022
2 C C C N N N 0 2.448 0.049 -0.176
3 CB C CA N N N 0 1.193 0.882 -0.147
4 CA C CB S N N 0 -0.016 -0.025 0.093
5 N N N N N N 0 0.082 -0.628 1.429
6 CG C CG N N N 0 -1.3 0.801 -0.001
7 CD C CD N N N 0 -2.512 -0.127 0.102
8 CE2 C CE2 N N N 0 -3.792 0.709 0.151
9 CE1 C CE1 N N N 0 -2.552 -1.051 -1.117
10 HB1 H HA N N N 0 1.262 1.615 0.657
11 HB2 H HAA N N N 0 1.076 1.398 -1.1
12 HA H HB N N N 0 -0.034 -0.812 -0.66
13 H H HN N N N 0 0.066 0.08 2.147
14 HG H HG N N N 0 -1.327 1.525 0.813
15 HGA H HGA N N N 0 -1.325 1.326 -0.956
16 HD H HD N N N 0 -2.435 -0.726 1.01
17 H3E2 H H3E2 N N N 0 -4.657 0.047 0.201
18 H2E2 H H2E2 N N N 0 -3.774 1.35 1.032
19 H1E2 H H1E2 N N N 0 -3.858 1.326 -0.746
20 H3E1 H H3E1 N N N 0 -3.415 -1.712 -1.043
21 H2E1 H H2E1 N N N 0 -2.629 -0.452 -2.024
22 H1E1 H H1E1 N N N 0 -1.64 -1.647 -1.151
23 OXT O OXT N N Y 0 3.639 0.637 -0.369
24 H2 H HNA N N Y 0 -0.65 -1.307 1.574
25 HXT H HXT N N Y 0 4.417 0.062 -0.376