Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Atoms of Molecule

 Molecule : BGH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1 R N N 0 0.198 -1.48 -0.68
2 C2 C C2 N N N 0 1.556 1.707 2.086
3 C2' C C3 R N N 0 0.036 -2.306 0.615
4 C3' C C4 R N N 0 -1.479 -2.249 0.91
5 C4 C C5 N N N 0 1.765 0.274 0.278
6 C4' C C6 R N N 0 -2.054 -1.395 -0.241
7 C5 C C7 N N N 0 3.025 0.786 0.007
8 C5' C C8 N N N 0 -3.182 -0.498 0.273
9 C6 C C9 N N N 0 3.54 1.795 0.835
10 C8 C C10 N N N 0 2.572 -0.84 -1.569
11 N1 N N1 N N N 0 2.787 2.242 1.861
12 N2 N N2 N N N 0 0.805 2.174 3.134
13 N3 N N3 N N N 0 1.068 0.758 1.319
14 N7 N N4 N N N 0 3.571 0.138 -1.119
15 N9 N N5 N N N 0 1.443 -0.708 -0.641
16 O2' O O1 N N N 0 0.455 -3.656 0.403
17 O3' O O2 N N N 0 -2.043 -3.562 0.892
18 O4' O O3 N N N 0 -0.942 -0.593 -0.697
19 O5' O O4 N N N 0 -3.728 0.252 -0.815
20 O6 O O5 N N N 0 4.647 2.268 0.623
21 OP1 O O6 N N N 0 -6.087 0.624 0.003
22 OP2 O O7 N N N 0 -4.452 2.526 0.287
23 P P P1 N N N 0 -4.936 1.301 -0.637
24 H3 H H3 N N N 0 -1.663 -1.769 1.871
25 C71 C C11 N N N 0 4.776 0.372 -1.675
26 C72 C C12 N N N 0 5.261 -0.491 -2.812
27 C6' C C13 N N N 0 0.982 -4.291 1.569
28 O71 O O8 N N N 0 5.47 1.276 -1.261
29 H1 H H1 N N N 0 0.184 -2.132 -1.553
30 H2 H H2 N N N 0 0.602 -1.854 1.43
31 H4 H H4 N N N 0 -2.414 -2.036 -1.046
32 H5 H H5 N N N 0 -3.963 -1.115 0.717
33 H6 H H6 N N N 0 -2.788 0.186 1.024
34 H7 H H7 N N N 0 2.252 -0.612 -2.586
35 H8 H H8 N N N 0 3.124 2.944 2.44
36 H9 H H9 N N N 0 1.153 2.877 3.705
37 H10 H H10 N N N 0 -0.074 1.801 3.305
38 H11 H H11 N N N 0 -2.992 -3.585 1.072
39 H13 H H13 N N N 0 -3.699 3.016 -0.072
40 H14 H H14 N N N 0 4.473 -1.185 -3.102
41 H15 H H15 N N N 0 5.52 0.141 -3.662
42 H16 H H16 N N N 0 6.14 -1.051 -2.493
43 H17 H H17 N N N 0 1.851 -3.737 1.923
44 H18 H H18 N N N 0 0.221 -4.31 2.348
45 H19 H H19 N N N 0 1.277 -5.312 1.325
46 OP3 O OP3 N N N 0 -5.378 1.86 -2.081
47 H20 H H20 N N N 0 2.984 -1.848 -1.522
48 H12 H H12 N N N 0 -6.103 2.498 -2.051