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PDBeChem : Atoms of Molecule
Molecule : BGH
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 48
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C1' |
C |
C1 |
R |
N |
N |
0 |
0.198 |
-1.48 |
-0.68 |
2 |
C2 |
C |
C2 |
N |
N |
N |
0 |
1.556 |
1.707 |
2.086 |
3 |
C2' |
C |
C3 |
R |
N |
N |
0 |
0.036 |
-2.306 |
0.615 |
4 |
C3' |
C |
C4 |
R |
N |
N |
0 |
-1.479 |
-2.249 |
0.91 |
5 |
C4 |
C |
C5 |
N |
N |
N |
0 |
1.765 |
0.274 |
0.278 |
6 |
C4' |
C |
C6 |
R |
N |
N |
0 |
-2.054 |
-1.395 |
-0.241 |
7 |
C5 |
C |
C7 |
N |
N |
N |
0 |
3.025 |
0.786 |
0.007 |
8 |
C5' |
C |
C8 |
N |
N |
N |
0 |
-3.182 |
-0.498 |
0.273 |
9 |
C6 |
C |
C9 |
N |
N |
N |
0 |
3.54 |
1.795 |
0.835 |
10 |
C8 |
C |
C10 |
N |
N |
N |
0 |
2.572 |
-0.84 |
-1.569 |
11 |
N1 |
N |
N1 |
N |
N |
N |
0 |
2.787 |
2.242 |
1.861 |
12 |
N2 |
N |
N2 |
N |
N |
N |
0 |
0.805 |
2.174 |
3.134 |
13 |
N3 |
N |
N3 |
N |
N |
N |
0 |
1.068 |
0.758 |
1.319 |
14 |
N7 |
N |
N4 |
N |
N |
N |
0 |
3.571 |
0.138 |
-1.119 |
15 |
N9 |
N |
N5 |
N |
N |
N |
0 |
1.443 |
-0.708 |
-0.641 |
16 |
O2' |
O |
O1 |
N |
N |
N |
0 |
0.455 |
-3.656 |
0.403 |
17 |
O3' |
O |
O2 |
N |
N |
N |
0 |
-2.043 |
-3.562 |
0.892 |
18 |
O4' |
O |
O3 |
N |
N |
N |
0 |
-0.942 |
-0.593 |
-0.697 |
19 |
O5' |
O |
O4 |
N |
N |
N |
0 |
-3.728 |
0.252 |
-0.815 |
20 |
O6 |
O |
O5 |
N |
N |
N |
0 |
4.647 |
2.268 |
0.623 |
21 |
OP1 |
O |
O6 |
N |
N |
N |
0 |
-6.087 |
0.624 |
0.003 |
22 |
OP2 |
O |
O7 |
N |
N |
N |
0 |
-4.452 |
2.526 |
0.287 |
23 |
P |
P |
P1 |
N |
N |
N |
0 |
-4.936 |
1.301 |
-0.637 |
24 |
H3 |
H |
H3 |
N |
N |
N |
0 |
-1.663 |
-1.769 |
1.871 |
25 |
C71 |
C |
C11 |
N |
N |
N |
0 |
4.776 |
0.372 |
-1.675 |
26 |
C72 |
C |
C12 |
N |
N |
N |
0 |
5.261 |
-0.491 |
-2.812 |
27 |
C6' |
C |
C13 |
N |
N |
N |
0 |
0.982 |
-4.291 |
1.569 |
28 |
O71 |
O |
O8 |
N |
N |
N |
0 |
5.47 |
1.276 |
-1.261 |
29 |
H1 |
H |
H1 |
N |
N |
N |
0 |
0.184 |
-2.132 |
-1.553 |
30 |
H2 |
H |
H2 |
N |
N |
N |
0 |
0.602 |
-1.854 |
1.43 |
31 |
H4 |
H |
H4 |
N |
N |
N |
0 |
-2.414 |
-2.036 |
-1.046 |
32 |
H5 |
H |
H5 |
N |
N |
N |
0 |
-3.963 |
-1.115 |
0.717 |
33 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-2.788 |
0.186 |
1.024 |
34 |
H7 |
H |
H7 |
N |
N |
N |
0 |
2.252 |
-0.612 |
-2.586 |
35 |
H8 |
H |
H8 |
N |
N |
N |
0 |
3.124 |
2.944 |
2.44 |
36 |
H9 |
H |
H9 |
N |
N |
N |
0 |
1.153 |
2.877 |
3.705 |
37 |
H10 |
H |
H10 |
N |
N |
N |
0 |
-0.074 |
1.801 |
3.305 |
38 |
H11 |
H |
H11 |
N |
N |
N |
0 |
-2.992 |
-3.585 |
1.072 |
39 |
H13 |
H |
H13 |
N |
N |
N |
0 |
-3.699 |
3.016 |
-0.072 |
40 |
H14 |
H |
H14 |
N |
N |
N |
0 |
4.473 |
-1.185 |
-3.102 |
41 |
H15 |
H |
H15 |
N |
N |
N |
0 |
5.52 |
0.141 |
-3.662 |
42 |
H16 |
H |
H16 |
N |
N |
N |
0 |
6.14 |
-1.051 |
-2.493 |
43 |
H17 |
H |
H17 |
N |
N |
N |
0 |
1.851 |
-3.737 |
1.923 |
44 |
H18 |
H |
H18 |
N |
N |
N |
0 |
0.221 |
-4.31 |
2.348 |
45 |
H19 |
H |
H19 |
N |
N |
N |
0 |
1.277 |
-5.312 |
1.325 |
46 |
OP3 |
O |
OP3 |
N |
N |
N |
0 |
-5.378 |
1.86 |
-2.081 |
47 |
H20 |
H |
H20 |
N |
N |
N |
0 |
2.984 |
-1.848 |
-1.522 |
48 |
H12 |
H |
H12 |
N |
N |
N |
0 |
-6.103 |
2.498 |
-2.051 |
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