Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : BIG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C2 N Y N 0 4.595 -2.135 1.293
2 C5 C C5 N Y N 0 4.847 -0.123 -0.471
3 C4 C C4 N Y N 0 3.603 -0.736 -0.24
4 C8 C C8 N Y N 0 3.338 0.887 -1.785
5 O3' O O3' N N N 0 -0.35 2.625 1.856
6 C3' C C3' R N N 0 -0.825 2.181 0.584
7 C4' C C4' S N N 0 -1.686 0.912 0.747
8 C5' C C5' N N N 0 -3.087 1.143 0.177
9 S5' S S5' N N N 0 -4.123 -0.308 0.512
10 C20 C C20 N N N 0 -5.716 0.149 -0.226
11 C21 C C21 N N N 0 -6.717 -0.99 -0.025
12 C22 C C22 N N N 0 -8.061 -0.605 -0.648
13 C23 C C23 N N N 0 -9.061 -1.744 -0.446
14 C1' C C1' N N N 0 -0.951 -0.178 -0.063
15 N1' N N1' N N N 0 0.46 0.283 -0.116
16 C2' C C2' N N N 0 0.357 1.752 -0.311
17 C10 C C10 N N N 0 1.178 -0.347 -1.232
18 N7 N N7 N Y N 0 4.651 0.858 -1.416
19 C6 C C6 N Y N 0 5.955 -0.589 0.245
20 N6 N N6 N N N 0 7.206 -0.022 0.06
21 N3 N N3 N Y N 0 3.524 -1.733 0.646
22 C9 C C9 N Y N 0 2.651 -0.054 -1.111
23 N1 N N1 N Y N 0 5.782 -1.586 1.107
24 H2 H H2 N N N 0 4.5 -2.94 2.007
25 H8 H H8 N N N 0 2.913 1.564 -2.512
26 HO3' H HO3' N N N 0 0.198 3.421 1.815
27 H3' H H3' N N N 0 -1.401 2.97 0.099
28 H4' H H4' N N N 0 -1.747 0.628 1.797
29 H5' H H5' N N N 0 -3.53 2.022 0.646
30 H5'A H H5'A N N N 0 -3.02 1.301 -0.9
31 H20 H H20 N N N 0 -6.093 1.053 0.253
32 H20A H H20A N N N 0 -5.583 0.332 -1.293
33 H21 H H21 N N N 0 -6.34 -1.894 -0.504
34 H21A H H21A N N N 0 -6.85 -1.173 1.041
35 H22 H H22 N N N 0 -8.437 0.299 -0.168
36 H22A H H22A N N N 0 -7.928 -0.422 -1.714
37 H23 H H23 N N N 0 -10.019 -1.47 -0.89
38 H23A H H23A N N N 0 -8.685 -2.648 -0.926
39 H23B H H23B N N N 0 -9.194 -1.927 0.62
40 H1' H H1' N N N 0 -1.018 -1.14 0.445
41 H1'A H H1'A N N N 0 -1.366 -0.249 -1.069
42 H2' H H2' N N N 0 0.148 1.983 -1.355
43 H2'A H H2'A N N N 0 1.276 2.243 0.011
44 H10 H H10 N N N 0 1.019 -1.425 -1.204
45 H10A H H10A N N N 0 0.805 0.051 -2.175
46 HN7 H HN7 N N N 0 5.342 1.442 -1.765
47 HN6 H HN6 N N N 0 7.321 0.705 -0.572
48 HN6A H HN6A N N N 0 7.968 -0.354 0.561