Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : BQL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N1 N N N 0 -5.219 2.275 -1.112
2 CA C C1 S N N 0 -5.83 0.947 -0.973
3 C C C2 N N N 0 -7.291 1.099 -0.635
4 O O O1 N N N 0 -7.773 2.201 -0.522
5 CB C C3 N N N 0 -5.126 0.176 0.146
6 C1' C C4 R N N 0 2.866 -0.627 -0.877
7 C2 C C5 N N N 0 3.318 1.185 0.679
8 C2' C C6 R N N 0 3.268 -1.787 0.07
9 C3 C C7 R N N 0 0.908 -1.817 -0.54
10 C3' C C8 S N N 0 2.043 -2.728 -0.032
11 C4 C C9 N N N 0 4.84 2.895 0.212
12 C5 C C10 N N N 0 5.116 2.293 -1.039
13 C5' C C11 N N N 0 -0.251 -1.824 0.459
14 C6 C C12 N N N 0 4.469 1.156 -1.378
15 N1 N N2 N N N 0 3.567 0.605 -0.51
16 N3 N N3 N N N 0 3.944 2.32 1.04
17 O1 O O2 N N N 0 2.296 -3.78 -0.965
18 O2 O O3 N N N 0 2.513 0.678 1.436
19 O3 O O4 N N N 0 4.451 -2.438 -0.396
20 O4 O O5 N N N 0 5.407 3.922 0.537
21 O4' O O6 N N N 0 1.446 -0.489 -0.656
22 O5' O O7 N N N 0 -1.34 -1.066 -0.071
23 OP1 O O8 N N N 0 -2.466 -0.008 2.056
24 OP2 O O9 N N N 0 -3.294 -2.18 1.074
25 OP3 O O10 N N N 0 -3.768 -0.07 -0.227
26 P P P1 N N N 0 -2.73 -0.86 0.716
27 H1 H H1 N N N 0 -5.623 2.78 -1.887
28 H2 H H2 N N N 0 -5.299 2.802 -0.255
29 H4 H H4 N N N 0 -5.729 0.4 -1.91
30 H5 H H5 N N N 0 -7.907 0.223 -0.494
31 H6 H H6 N N N 0 -5.15 0.764 1.063
32 H7 H H7 N N N 0 -5.635 -0.773 0.31
33 H8 H H8 N N N 0 3.069 -0.891 -1.915
34 H9 H H9 N N N 0 3.399 -1.428 1.091
35 H10 H H10 N N N 0 0.561 -2.166 -1.513
36 H11 H H11 N N N 0 1.794 -3.137 0.947
37 H12 H H12 N N N 0 5.83 2.738 -1.716
38 H13 H H13 N N N 0 -0.574 -2.85 0.635
39 H14 H H14 N N N 0 0.077 -1.38 1.399
40 H15 H H15 N N N 0 4.667 0.683 -2.328
41 H16 H H16 N N N 0 3.749 2.728 1.898
42 H17 H H17 N N N 0 3.039 -4.349 -0.724
43 H18 H H18 N N N 0 4.743 -3.171 0.164
44 H19 H H19 N N N 0 -2.095 0.871 1.897